miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22946 5' -62.5 NC_005137.2 + 21227 0.69 0.384978
Target:  5'- aCGUGGGC-GaCGCUGCgggCCGCGUGUc -3'
miRNA:   3'- cGCGCUCGaC-GCGGCGa--GGCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 31713 0.69 0.384978
Target:  5'- aCGUGuGCacguucGCGUCGUUUCGCGUGCGu -3'
miRNA:   3'- cGCGCuCGa-----CGCGGCGAGGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 112889 0.69 0.384978
Target:  5'- aCGCGGGCUGCGCguacccgaCGCUaguuuccgaaguUUGCGUGUAc -3'
miRNA:   3'- cGCGCUCGACGCG--------GCGA------------GGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 131008 0.7 0.353588
Target:  5'- gGCGCGGGCUGCGCguccaacgCGUUCUuaG-GCAa -3'
miRNA:   3'- -CGCGCUCGACGCG--------GCGAGGcgCaCGU- -5'
22946 5' -62.5 NC_005137.2 + 48767 0.71 0.309985
Target:  5'- gGCGCGAucguuggacGCgGCGCCGCacagCGUGUGCGg -3'
miRNA:   3'- -CGCGCU---------CGaCGCGGCGag--GCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 7163 0.72 0.277507
Target:  5'- cGCGCGuGCgccacguugugcccgGCGaCCGCucgUCCGUGUGCGc -3'
miRNA:   3'- -CGCGCuCGa--------------CGC-GGCG---AGGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 95612 0.72 0.276241
Target:  5'- uGCGCGAcguGCUGUuuaacgaGUCGUuuuuUCCGCGUGCGc -3'
miRNA:   3'- -CGCGCU---CGACG-------CGGCG----AGGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 112227 0.72 0.264441
Target:  5'- uGCGCGcAGUgaugauugaacGCGgCGUUCCGCGUGCu -3'
miRNA:   3'- -CGCGC-UCGa----------CGCgGCGAGGCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 100190 0.73 0.229855
Target:  5'- cCGCGcGCcGCGUCGgaCCGCGUGCu -3'
miRNA:   3'- cGCGCuCGaCGCGGCgaGGCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 87478 0.73 0.229855
Target:  5'- -gGCcAGCUGCGCCGUUUCGCGacGCGc -3'
miRNA:   3'- cgCGcUCGACGCGGCGAGGCGCa-CGU- -5'
22946 5' -62.5 NC_005137.2 + 2177 0.74 0.208979
Target:  5'- gGCGCGAccuaaauaGuCUGCGCCGCa--GCGUGCAc -3'
miRNA:   3'- -CGCGCU--------C-GACGCGGCGaggCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 55572 0.74 0.208979
Target:  5'- aCGCGGGCgGCGCCGUg-CGCGUGgAg -3'
miRNA:   3'- cGCGCUCGaCGCGGCGagGCGCACgU- -5'
22946 5' -62.5 NC_005137.2 + 45602 0.77 0.127671
Target:  5'- uGCGCGuGCUGCGCCGC-CCGCu---- -3'
miRNA:   3'- -CGCGCuCGACGCGGCGaGGCGcacgu -5'
22946 5' -62.5 NC_005137.2 + 100284 0.77 0.118348
Target:  5'- uGgGCGAGCUGUGCCGCUucgaaaccCCGCuugGUGCu -3'
miRNA:   3'- -CgCGCUCGACGCGGCGA--------GGCG---CACGu -5'
22946 5' -62.5 NC_005137.2 + 72345 1.09 0.000616
Target:  5'- uGCGCGAGCUGCGCCGCUCCGCGUGCAc -3'
miRNA:   3'- -CGCGCUCGACGCGGCGAGGCGCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.