miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22948 3' -55.4 NC_005137.2 + 115738 0.66 0.911633
Target:  5'- uGGA-CGCcaaggUGCAACGcaacGUGCGCgCGCGg -3'
miRNA:   3'- -CCUgGCGa----ACGUUGCu---CACGCG-GUGU- -5'
22948 3' -55.4 NC_005137.2 + 77888 0.66 0.909192
Target:  5'- cGGuACUGCaUGCAgguguuuaacgcccACGAuaacaugugcgaaGUGCGCCACu -3'
miRNA:   3'- -CC-UGGCGaACGU--------------UGCU-------------CACGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 80058 0.66 0.905457
Target:  5'- uGGACgCGUUggccUGCAGCGAuucaacuaguuuGcGUGCCGCAa -3'
miRNA:   3'- -CCUG-GCGA----ACGUUGCU------------CaCGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 121754 0.66 0.905457
Target:  5'- uGGGgCGgUUGCAuaacuauaAUGGGUGUGCCGg- -3'
miRNA:   3'- -CCUgGCgAACGU--------UGCUCACGCGGUgu -5'
22948 3' -55.4 NC_005137.2 + 110723 0.66 0.899039
Target:  5'- cGGugUGCgcGCAgaGCGcuuGUGCGCCGg- -3'
miRNA:   3'- -CCugGCGaaCGU--UGCu--CACGCGGUgu -5'
22948 3' -55.4 NC_005137.2 + 98185 0.66 0.88549
Target:  5'- uGGAcCCGCUcGCAGCGcccgacGUGCacgcugGCCACu -3'
miRNA:   3'- -CCU-GGCGAaCGUUGCu-----CACG------CGGUGu -5'
22948 3' -55.4 NC_005137.2 + 63807 0.66 0.88549
Target:  5'- uGACCGCgggcGCGACGcGaUGCGCgACc -3'
miRNA:   3'- cCUGGCGaa--CGUUGCuC-ACGCGgUGu -5'
22948 3' -55.4 NC_005137.2 + 7635 0.66 0.884788
Target:  5'- cGGGCacaaGCUUGCggUGGGcggcuauUGCaCCACAa -3'
miRNA:   3'- -CCUGg---CGAACGuuGCUC-------ACGcGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 31359 0.66 0.878367
Target:  5'- cGACCGCUgguacaaggGCGACGcgggccGGuUGCGCCGu- -3'
miRNA:   3'- cCUGGCGAa--------CGUUGC------UC-ACGCGGUgu -5'
22948 3' -55.4 NC_005137.2 + 68587 0.66 0.875454
Target:  5'- uGGGCUGCgccgacucguuCAACccGUGCGCCACGu -3'
miRNA:   3'- -CCUGGCGaac--------GUUGcuCACGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 97988 0.67 0.871018
Target:  5'- cGGGCgCGCg-GCGugG-GUGCGCC-CGc -3'
miRNA:   3'- -CCUG-GCGaaCGUugCuCACGCGGuGU- -5'
22948 3' -55.4 NC_005137.2 + 66602 0.67 0.871018
Target:  5'- -uGCCGgaCUUGCGAC-AGUG-GCCACAa -3'
miRNA:   3'- ccUGGC--GAACGUUGcUCACgCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 37392 0.67 0.871018
Target:  5'- cGGAaaGCUUGCAAUGGaUGCGagGCGg -3'
miRNA:   3'- -CCUggCGAACGUUGCUcACGCggUGU- -5'
22948 3' -55.4 NC_005137.2 + 48921 0.67 0.871018
Target:  5'- cGGcGCCGCgucCAACGAucGCGCCGCc -3'
miRNA:   3'- -CC-UGGCGaacGUUGCUcaCGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 96473 0.67 0.863448
Target:  5'- uGACCGCgaacGCAACacGGUGCGCguCGu -3'
miRNA:   3'- cCUGGCGaa--CGUUGc-UCACGCGguGU- -5'
22948 3' -55.4 NC_005137.2 + 24532 0.67 0.856451
Target:  5'- uGGCCGUUUGCAucaagACGccguacuugaagauuGUGCGCUACu -3'
miRNA:   3'- cCUGGCGAACGU-----UGCu--------------CACGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 129883 0.67 0.855663
Target:  5'- ---aCGCUUG-AGCGGGUggaggugaagGCGCCACAa -3'
miRNA:   3'- ccugGCGAACgUUGCUCA----------CGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 46065 0.67 0.855663
Target:  5'- -cGCCGC-UGCAcaGcGUGCGCCGCu -3'
miRNA:   3'- ccUGGCGaACGUugCuCACGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 95647 0.67 0.855663
Target:  5'- cGugCGCcgUGCGccgACGggcaAGUGCGCCugGa -3'
miRNA:   3'- cCugGCGa-ACGU---UGC----UCACGCGGugU- -5'
22948 3' -55.4 NC_005137.2 + 3251 0.67 0.855663
Target:  5'- -cGCCGUUUGCAACGuguuuGUGUGaUCGCu -3'
miRNA:   3'- ccUGGCGAACGUUGCu----CACGC-GGUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.