miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22948 3' -55.4 NC_005137.2 + 77379 1.1 0.002201
Target:  5'- uGGACCGCUUGCAACGAGUGCGCCACAu -3'
miRNA:   3'- -CCUGGCGAACGUUGCUCACGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 79864 0.73 0.543439
Target:  5'- cGGGCaGCg-GCAuaACGAGUGCGCCAa- -3'
miRNA:   3'- -CCUGgCGaaCGU--UGCUCACGCGGUgu -5'
22948 3' -55.4 NC_005137.2 + 39941 0.73 0.553578
Target:  5'- uGGCCGCcaUUGuCAGC-AGUGUGCCACGu -3'
miRNA:   3'- cCUGGCG--AAC-GUUGcUCACGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 41620 0.71 0.625729
Target:  5'- cGuCCGCUgcgGaCAGCGcGUGCGCCAUg -3'
miRNA:   3'- cCuGGCGAa--C-GUUGCuCACGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 17312 0.71 0.646504
Target:  5'- uGACgCGCUgUGCGACGuGcGCGUCGCAg -3'
miRNA:   3'- cCUG-GCGA-ACGUUGCuCaCGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 7186 0.71 0.655841
Target:  5'- cGAUUGCg-GCGACGAggccgugacgcgcGUGCGCCACGu -3'
miRNA:   3'- cCUGGCGaaCGUUGCU-------------CACGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 16863 0.7 0.677557
Target:  5'- -cACCGCgUUGCugcACGAGaUGCGCCAa- -3'
miRNA:   3'- ccUGGCG-AACGu--UGCUC-ACGCGGUgu -5'
22948 3' -55.4 NC_005137.2 + 26493 0.7 0.708262
Target:  5'- uGGGCCGCUUGUcGCGuuUGaCGCgGCc -3'
miRNA:   3'- -CCUGGCGAACGuUGCucAC-GCGgUGu -5'
22948 3' -55.4 NC_005137.2 + 115296 0.7 0.708262
Target:  5'- cGGACgaGC-UGCgGGCGAuUGCGCCGCGg -3'
miRNA:   3'- -CCUGg-CGaACG-UUGCUcACGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 50668 0.7 0.708262
Target:  5'- uGACCGCUU-CAGCGAugGCGCC-CAa -3'
miRNA:   3'- cCUGGCGAAcGUUGCUcaCGCGGuGU- -5'
22948 3' -55.4 NC_005137.2 + 12088 0.7 0.708262
Target:  5'- cGACCGCaaGU-GCGAGuUGCGCUGCAg -3'
miRNA:   3'- cCUGGCGaaCGuUGCUC-ACGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 95383 0.69 0.75798
Target:  5'- uGGCUGCUUGCcgaaacggaGACGGGauuUGCGCUGCu -3'
miRNA:   3'- cCUGGCGAACG---------UUGCUC---ACGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 13948 0.69 0.767618
Target:  5'- uGGACCaaauGCcuagcgGCAGCGAGUGUGCgAUu -3'
miRNA:   3'- -CCUGG----CGaa----CGUUGCUCACGCGgUGu -5'
22948 3' -55.4 NC_005137.2 + 7138 0.69 0.767618
Target:  5'- cGACCGCUcGUc-CGuGUGCGCCAgCAu -3'
miRNA:   3'- cCUGGCGAaCGuuGCuCACGCGGU-GU- -5'
22948 3' -55.4 NC_005137.2 + 25673 0.69 0.777132
Target:  5'- -aAUCGCgcguUGCAACGAGcgugacgGCGCCAUg -3'
miRNA:   3'- ccUGGCGa---ACGUUGCUCa------CGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 44968 0.68 0.813757
Target:  5'- aGACCG---GCAA-GAGUGCGUCACGa -3'
miRNA:   3'- cCUGGCgaaCGUUgCUCACGCGGUGU- -5'
22948 3' -55.4 NC_005137.2 + 113548 0.68 0.831086
Target:  5'- cGAUCGUUcgUGUAaaGCGAGUGUGCUAUu -3'
miRNA:   3'- cCUGGCGA--ACGU--UGCUCACGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 22920 0.68 0.831086
Target:  5'- cGAUCGUUcgUGUAaaGCGAGUGUGCUAUu -3'
miRNA:   3'- cCUGGCGA--ACGU--UGCUCACGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 22793 0.68 0.831086
Target:  5'- cGAUCGUUcgUGUAaaGCGAGUGUGCUAUu -3'
miRNA:   3'- cCUGGCGA--ACGU--UGCUCACGCGGUGu -5'
22948 3' -55.4 NC_005137.2 + 10904 0.67 0.842777
Target:  5'- uGGACCGCUuuuuucugcuggaagUGCuggccGACGcGUGCGCgAUg -3'
miRNA:   3'- -CCUGGCGA---------------ACG-----UUGCuCACGCGgUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.