Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 110723 | 0.66 | 0.899039 |
Target: 5'- cGGugUGCgcGCAgaGCGcuuGUGCGCCGg- -3' miRNA: 3'- -CCugGCGaaCGU--UGCu--CACGCGGUgu -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 113548 | 0.68 | 0.831086 |
Target: 5'- cGAUCGUUcgUGUAaaGCGAGUGUGCUAUu -3' miRNA: 3'- cCUGGCGA--ACGU--UGCUCACGCGGUGu -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 107808 | 0.67 | 0.84767 |
Target: 5'- aGAaa-CUUGCAAUGGGUgGUGCCGCAa -3' miRNA: 3'- cCUggcGAACGUUGCUCA-CGCGGUGU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 46065 | 0.67 | 0.855663 |
Target: 5'- -cGCCGC-UGCAcaGcGUGCGCCGCu -3' miRNA: 3'- ccUGGCGaACGUugCuCACGCGGUGu -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 95647 | 0.67 | 0.855663 |
Target: 5'- cGugCGCcgUGCGccgACGggcaAGUGCGCCugGa -3' miRNA: 3'- cCugGCGa-ACGU---UGC----UCACGCGGugU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 24532 | 0.67 | 0.856451 |
Target: 5'- uGGCCGUUUGCAucaagACGccguacuugaagauuGUGCGCUACu -3' miRNA: 3'- cCUGGCGAACGU-----UGCu--------------CACGCGGUGu -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 96473 | 0.67 | 0.863448 |
Target: 5'- uGACCGCgaacGCAACacGGUGCGCguCGu -3' miRNA: 3'- cCUGGCGaa--CGUUGc-UCACGCGguGU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 66602 | 0.67 | 0.871018 |
Target: 5'- -uGCCGgaCUUGCGAC-AGUG-GCCACAa -3' miRNA: 3'- ccUGGC--GAACGUUGcUCACgCGGUGU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 97988 | 0.67 | 0.871018 |
Target: 5'- cGGGCgCGCg-GCGugG-GUGCGCC-CGc -3' miRNA: 3'- -CCUG-GCGaaCGUugCuCACGCGGuGU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 22920 | 0.68 | 0.831086 |
Target: 5'- cGAUCGUUcgUGUAaaGCGAGUGUGCUAUu -3' miRNA: 3'- cCUGGCGA--ACGU--UGCUCACGCGGUGu -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 22793 | 0.68 | 0.831086 |
Target: 5'- cGAUCGUUcgUGUAaaGCGAGUGUGCUAUu -3' miRNA: 3'- cCUGGCGA--ACGU--UGCUCACGCGGUGu -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 44968 | 0.68 | 0.813757 |
Target: 5'- aGACCG---GCAA-GAGUGCGUCACGa -3' miRNA: 3'- cCUGGCgaaCGUUgCUCACGCGGUGU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 17312 | 0.71 | 0.646504 |
Target: 5'- uGACgCGCUgUGCGACGuGcGCGUCGCAg -3' miRNA: 3'- cCUG-GCGA-ACGUUGCuCaCGCGGUGU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 16863 | 0.7 | 0.677557 |
Target: 5'- -cACCGCgUUGCugcACGAGaUGCGCCAa- -3' miRNA: 3'- ccUGGCG-AACGu--UGCUC-ACGCGGUgu -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 26493 | 0.7 | 0.708262 |
Target: 5'- uGGGCCGCUUGUcGCGuuUGaCGCgGCc -3' miRNA: 3'- -CCUGGCGAACGuUGCucAC-GCGgUGu -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 12088 | 0.7 | 0.708262 |
Target: 5'- cGACCGCaaGU-GCGAGuUGCGCUGCAg -3' miRNA: 3'- cCUGGCGaaCGuUGCUC-ACGCGGUGU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 50668 | 0.7 | 0.708262 |
Target: 5'- uGACCGCUU-CAGCGAugGCGCC-CAa -3' miRNA: 3'- cCUGGCGAAcGUUGCUcaCGCGGuGU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 115296 | 0.7 | 0.708262 |
Target: 5'- cGGACgaGC-UGCgGGCGAuUGCGCCGCGg -3' miRNA: 3'- -CCUGg-CGaACG-UUGCUcACGCGGUGU- -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 95383 | 0.69 | 0.75798 |
Target: 5'- uGGCUGCUUGCcgaaacggaGACGGGauuUGCGCUGCu -3' miRNA: 3'- cCUGGCGAACG---------UUGCUC---ACGCGGUGu -5' |
|||||||
22948 | 3' | -55.4 | NC_005137.2 | + | 13948 | 0.69 | 0.767618 |
Target: 5'- uGGACCaaauGCcuagcgGCAGCGAGUGUGCgAUu -3' miRNA: 3'- -CCUGG----CGaa----CGUUGCUCACGCGgUGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home