miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22948 5' -52.3 NC_005137.2 + 123277 0.66 0.979431
Target:  5'- -aCGUAGGAaaACGuGCACAccgGCGCa -3'
miRNA:   3'- cgGCAUCCUggUGU-CGUGUucaUGCG- -5'
22948 5' -52.3 NC_005137.2 + 113187 0.66 0.979431
Target:  5'- cGCCGaugcuUAGaGAUCGCgcgcuAGCAguCAAGUugGCa -3'
miRNA:   3'- -CGGC-----AUC-CUGGUG-----UCGU--GUUCAugCG- -5'
22948 5' -52.3 NC_005137.2 + 34842 0.66 0.979431
Target:  5'- aUCGgacacGGGACCccACGGCGCuugcuGGUGCGg -3'
miRNA:   3'- cGGCa----UCCUGG--UGUCGUGu----UCAUGCg -5'
22948 5' -52.3 NC_005137.2 + 97975 0.66 0.977042
Target:  5'- aUUGUAGGcaaaacggGCgCGCGGCGUggGUGCGCc -3'
miRNA:   3'- cGGCAUCC--------UG-GUGUCGUGuuCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 77563 0.66 0.974456
Target:  5'- uGCUGUGGucCUACGGCAgUAAGgagcaugugGCGCa -3'
miRNA:   3'- -CGGCAUCcuGGUGUCGU-GUUCa--------UGCG- -5'
22948 5' -52.3 NC_005137.2 + 47728 0.66 0.971664
Target:  5'- uCCGcAGGugCuguGCacugGCAAGUACGCg -3'
miRNA:   3'- cGGCaUCCugGuguCG----UGUUCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 31371 0.66 0.96866
Target:  5'- aGCUGgugugcGcGACCGCuGGUACAAGggcgACGCg -3'
miRNA:   3'- -CGGCau----C-CUGGUG-UCGUGUUCa---UGCG- -5'
22948 5' -52.3 NC_005137.2 + 32819 0.66 0.96866
Target:  5'- cGuuGUcaaaAGGACgGCAGCGCAAaaaguGUAUGa -3'
miRNA:   3'- -CggCA----UCCUGgUGUCGUGUU-----CAUGCg -5'
22948 5' -52.3 NC_005137.2 + 110899 0.66 0.96866
Target:  5'- uGCCGUAcaccGAUCGCccggcGCACAAGcgcucUGCGCg -3'
miRNA:   3'- -CGGCAUc---CUGGUGu----CGUGUUC-----AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 110619 0.67 0.965435
Target:  5'- uCCGUGGuGACgGCcguGCACAA--ACGCg -3'
miRNA:   3'- cGGCAUC-CUGgUGu--CGUGUUcaUGCG- -5'
22948 5' -52.3 NC_005137.2 + 103826 0.67 0.965435
Target:  5'- gGCgGguuGGugCACGGCAUAAGcaaaaACGUa -3'
miRNA:   3'- -CGgCau-CCugGUGUCGUGUUCa----UGCG- -5'
22948 5' -52.3 NC_005137.2 + 73781 0.67 0.965435
Target:  5'- gGgCGUAGccucguucGCCACGGCcugcuGCAGGUugGCc -3'
miRNA:   3'- -CgGCAUCc-------UGGUGUCG-----UGUUCAugCG- -5'
22948 5' -52.3 NC_005137.2 + 12853 0.67 0.964423
Target:  5'- gGCCGUAgcccggcgcaaucuGGAUCACGGgCGCGGG-GCGa -3'
miRNA:   3'- -CGGCAU--------------CCUGGUGUC-GUGUUCaUGCg -5'
22948 5' -52.3 NC_005137.2 + 72611 0.67 0.961983
Target:  5'- cCUGUAGGACUuuuGGUucuuCAAGUAUGCc -3'
miRNA:   3'- cGGCAUCCUGGug-UCGu---GUUCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 12082 0.67 0.961983
Target:  5'- cGUCGcc-GACCGCaAGUGCGAGUuGCGCu -3'
miRNA:   3'- -CGGCaucCUGGUG-UCGUGUUCA-UGCG- -5'
22948 5' -52.3 NC_005137.2 + 9004 0.67 0.954379
Target:  5'- gGCgGUGGGACUAagguuguuaGGCGCAuaggguugcaugGGUGCGg -3'
miRNA:   3'- -CGgCAUCCUGGUg--------UCGUGU------------UCAUGCg -5'
22948 5' -52.3 NC_005137.2 + 72294 0.67 0.950216
Target:  5'- cGUCGUuGGacguGCCGCAGCguuagGCGAacGUACGCc -3'
miRNA:   3'- -CGGCAuCC----UGGUGUCG-----UGUU--CAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 38334 0.67 0.950216
Target:  5'- cUCGUAGGGCguaaGCAGCGCGuugacAGUgGCGUu -3'
miRNA:   3'- cGGCAUCCUGg---UGUCGUGU-----UCA-UGCG- -5'
22948 5' -52.3 NC_005137.2 + 112447 0.67 0.950216
Target:  5'- gGCCGUuGGA-CGCGGCgGCAGGaUGgGCg -3'
miRNA:   3'- -CGGCAuCCUgGUGUCG-UGUUC-AUgCG- -5'
22948 5' -52.3 NC_005137.2 + 122936 0.68 0.945807
Target:  5'- gGCCGUGGGGCa--AGUAUAaaAGgcguUGCGCg -3'
miRNA:   3'- -CGGCAUCCUGgugUCGUGU--UC----AUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.