miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22948 5' -52.3 NC_005137.2 + 58704 0.68 0.945807
Target:  5'- uUCGUuGGGCCGCcaauuGUACGAGauuaUGCGCg -3'
miRNA:   3'- cGGCAuCCUGGUGu----CGUGUUC----AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 111044 0.68 0.93624
Target:  5'- gGCCGUaAGGGCCguugACAGCA-AGGUcacCGCu -3'
miRNA:   3'- -CGGCA-UCCUGG----UGUCGUgUUCAu--GCG- -5'
22948 5' -52.3 NC_005137.2 + 20722 0.68 0.93624
Target:  5'- uGUCGcgAGGuCCuCGGUACGcGUGCGCu -3'
miRNA:   3'- -CGGCa-UCCuGGuGUCGUGUuCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 12654 0.68 0.933174
Target:  5'- uGCCGUauagugggcguguuGGGGCCaaauugcaguuugaGCAGCGCGucGGaacgGCGCg -3'
miRNA:   3'- -CGGCA--------------UCCUGG--------------UGUCGUGU--UCa---UGCG- -5'
22948 5' -52.3 NC_005137.2 + 70021 0.68 0.931078
Target:  5'- cGCCGgcaaucCCACGGCACcgcguacguGGUGCGCc -3'
miRNA:   3'- -CGGCauccu-GGUGUCGUGu--------UCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 100245 0.68 0.931078
Target:  5'- aCCGauccGGGcGCCGCAacGCACGGGcGCGCg -3'
miRNA:   3'- cGGCa---UCC-UGGUGU--CGUGUUCaUGCG- -5'
22948 5' -52.3 NC_005137.2 + 95651 0.69 0.914067
Target:  5'- cGCCGU-GcGCCgACGG-GCAAGUGCGCc -3'
miRNA:   3'- -CGGCAuCcUGG-UGUCgUGUUCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 67990 0.69 0.90789
Target:  5'- cGUCGUuGG-CCAC-GCGCGAGcaaUACGCu -3'
miRNA:   3'- -CGGCAuCCuGGUGuCGUGUUC---AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 99319 0.69 0.90789
Target:  5'- gGCCGcugccaucaAGGAUggcaaACAGCGCGuGGUACGCg -3'
miRNA:   3'- -CGGCa--------UCCUGg----UGUCGUGU-UCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 95900 0.69 0.901463
Target:  5'- cGCUGauuGGAuCCACcgAGCACGGGUccacgACGCa -3'
miRNA:   3'- -CGGCau-CCU-GGUG--UCGUGUUCA-----UGCG- -5'
22948 5' -52.3 NC_005137.2 + 95588 0.69 0.894788
Target:  5'- cGCCGUuuuGCCGCccGCGCAcuGUGCGCg -3'
miRNA:   3'- -CGGCAuccUGGUGu-CGUGUu-CAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 78106 0.69 0.894788
Target:  5'- aCCGUgaauaAGGugCGCGGUguccACAAGU-CGCg -3'
miRNA:   3'- cGGCA-----UCCugGUGUCG----UGUUCAuGCG- -5'
22948 5' -52.3 NC_005137.2 + 64035 0.69 0.894788
Target:  5'- -aCGUGGGAU---GGUGCAAGUugGCg -3'
miRNA:   3'- cgGCAUCCUGgugUCGUGUUCAugCG- -5'
22948 5' -52.3 NC_005137.2 + 87417 0.69 0.887869
Target:  5'- gGCUGUGuGuGACUugGGCaACGaccAGUACGCa -3'
miRNA:   3'- -CGGCAU-C-CUGGugUCG-UGU---UCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 109026 0.69 0.887869
Target:  5'- cGCgCGUGGGuugGCUACAGCAgGAcuuUACGCc -3'
miRNA:   3'- -CG-GCAUCC---UGGUGUCGUgUUc--AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 46048 0.69 0.887164
Target:  5'- cGCCaacgAGGuuaugccGCCGCuGCACAGcGUGCGCc -3'
miRNA:   3'- -CGGca--UCC-------UGGUGuCGUGUU-CAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 33421 0.7 0.88071
Target:  5'- cGCCGcaauugauGGACaugaGCAGCACGcGGUACGg -3'
miRNA:   3'- -CGGCau------CCUGg---UGUCGUGU-UCAUGCg -5'
22948 5' -52.3 NC_005137.2 + 50629 0.7 0.873317
Target:  5'- cGCCGgcacGGGGCUGCAGCACcuugcCGCc -3'
miRNA:   3'- -CGGCa---UCCUGGUGUCGUGuucauGCG- -5'
22948 5' -52.3 NC_005137.2 + 98165 0.7 0.865693
Target:  5'- aGCCGgcGcgcGGCCACAG-AUAAGaUACGCg -3'
miRNA:   3'- -CGGCauC---CUGGUGUCgUGUUC-AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 23720 0.7 0.849782
Target:  5'- aGCCGUGGGAagaaCAC-GCACGuuGGUuugauCGCu -3'
miRNA:   3'- -CGGCAUCCUg---GUGuCGUGU--UCAu----GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.