miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22948 5' -52.3 NC_005137.2 + 9004 0.67 0.954379
Target:  5'- gGCgGUGGGACUAagguuguuaGGCGCAuaggguugcaugGGUGCGg -3'
miRNA:   3'- -CGgCAUCCUGGUg--------UCGUGU------------UCAUGCg -5'
22948 5' -52.3 NC_005137.2 + 12082 0.67 0.961983
Target:  5'- cGUCGcc-GACCGCaAGUGCGAGUuGCGCu -3'
miRNA:   3'- -CGGCaucCUGGUG-UCGUGUUCA-UGCG- -5'
22948 5' -52.3 NC_005137.2 + 12654 0.68 0.933174
Target:  5'- uGCCGUauagugggcguguuGGGGCCaaauugcaguuugaGCAGCGCGucGGaacgGCGCg -3'
miRNA:   3'- -CGGCA--------------UCCUGG--------------UGUCGUGU--UCa---UGCG- -5'
22948 5' -52.3 NC_005137.2 + 12853 0.67 0.964423
Target:  5'- gGCCGUAgcccggcgcaaucuGGAUCACGGgCGCGGG-GCGa -3'
miRNA:   3'- -CGGCAU--------------CCUGGUGUC-GUGUUCaUGCg -5'
22948 5' -52.3 NC_005137.2 + 20722 0.68 0.93624
Target:  5'- uGUCGcgAGGuCCuCGGUACGcGUGCGCu -3'
miRNA:   3'- -CGGCa-UCCuGGuGUCGUGUuCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 23720 0.7 0.849782
Target:  5'- aGCCGUGGGAagaaCAC-GCACGuuGGUuugauCGCu -3'
miRNA:   3'- -CGGCAUCCUg---GUGuCGUGU--UCAu----GCG- -5'
22948 5' -52.3 NC_005137.2 + 31371 0.66 0.96866
Target:  5'- aGCUGgugugcGcGACCGCuGGUACAAGggcgACGCg -3'
miRNA:   3'- -CGGCau----C-CUGGUG-UCGUGUUCa---UGCG- -5'
22948 5' -52.3 NC_005137.2 + 32819 0.66 0.96866
Target:  5'- cGuuGUcaaaAGGACgGCAGCGCAAaaaguGUAUGa -3'
miRNA:   3'- -CggCA----UCCUGgUGUCGUGUU-----CAUGCg -5'
22948 5' -52.3 NC_005137.2 + 33421 0.7 0.88071
Target:  5'- cGCCGcaauugauGGACaugaGCAGCACGcGGUACGg -3'
miRNA:   3'- -CGGCau------CCUGg---UGUCGUGU-UCAUGCg -5'
22948 5' -52.3 NC_005137.2 + 34842 0.66 0.979431
Target:  5'- aUCGgacacGGGACCccACGGCGCuugcuGGUGCGg -3'
miRNA:   3'- cGGCa----UCCUGG--UGUCGUGu----UCAUGCg -5'
22948 5' -52.3 NC_005137.2 + 35539 0.73 0.698151
Target:  5'- gGCCGUGGGcaaCACGGCGCuuGUcaagacACGCa -3'
miRNA:   3'- -CGGCAUCCug-GUGUCGUGuuCA------UGCG- -5'
22948 5' -52.3 NC_005137.2 + 38334 0.67 0.950216
Target:  5'- cUCGUAGGGCguaaGCAGCGCGuugacAGUgGCGUu -3'
miRNA:   3'- cGGCAUCCUGg---UGUCGUGU-----UCA-UGCG- -5'
22948 5' -52.3 NC_005137.2 + 46048 0.69 0.887164
Target:  5'- cGCCaacgAGGuuaugccGCCGCuGCACAGcGUGCGCc -3'
miRNA:   3'- -CGGca--UCC-------UGGUGuCGUGUU-CAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 47728 0.66 0.971664
Target:  5'- uCCGcAGGugCuguGCacugGCAAGUACGCg -3'
miRNA:   3'- cGGCaUCCugGuguCG----UGUUCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 50629 0.7 0.873317
Target:  5'- cGCCGgcacGGGGCUGCAGCACcuugcCGCc -3'
miRNA:   3'- -CGGCa---UCCUGGUGUCGUGuucauGCG- -5'
22948 5' -52.3 NC_005137.2 + 58704 0.68 0.945807
Target:  5'- uUCGUuGGGCCGCcaauuGUACGAGauuaUGCGCg -3'
miRNA:   3'- cGGCAuCCUGGUGu----CGUGUUC----AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 64035 0.69 0.894788
Target:  5'- -aCGUGGGAU---GGUGCAAGUugGCg -3'
miRNA:   3'- cgGCAUCCUGgugUCGUGUUCAugCG- -5'
22948 5' -52.3 NC_005137.2 + 67990 0.69 0.90789
Target:  5'- cGUCGUuGG-CCAC-GCGCGAGcaaUACGCu -3'
miRNA:   3'- -CGGCAuCCuGGUGuCGUGUUC---AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 68672 0.72 0.7784
Target:  5'- cGCgCGUGgcGGAUgACAGCAUAAuaagcGUGCGCa -3'
miRNA:   3'- -CG-GCAU--CCUGgUGUCGUGUU-----CAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 70021 0.68 0.931078
Target:  5'- cGCCGgcaaucCCACGGCACcgcguacguGGUGCGCc -3'
miRNA:   3'- -CGGCauccu-GGUGUCGUGu--------UCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.