miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22948 5' -52.3 NC_005137.2 + 112447 0.67 0.950216
Target:  5'- gGCCGUuGGA-CGCGGCgGCAGGaUGgGCg -3'
miRNA:   3'- -CGGCAuCCUgGUGUCG-UGUUC-AUgCG- -5'
22948 5' -52.3 NC_005137.2 + 99319 0.69 0.90789
Target:  5'- gGCCGcugccaucaAGGAUggcaaACAGCGCGuGGUACGCg -3'
miRNA:   3'- -CGGCa--------UCCUGg----UGUCGUGU-UCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 95651 0.69 0.914067
Target:  5'- cGCCGU-GcGCCgACGG-GCAAGUGCGCc -3'
miRNA:   3'- -CGGCAuCcUGG-UGUCgUGUUCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 70021 0.68 0.931078
Target:  5'- cGCCGgcaaucCCACGGCACcgcguacguGGUGCGCc -3'
miRNA:   3'- -CGGCauccu-GGUGUCGUGu--------UCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 100245 0.68 0.931078
Target:  5'- aCCGauccGGGcGCCGCAacGCACGGGcGCGCg -3'
miRNA:   3'- cGGCa---UCC-UGGUGU--CGUGUUCaUGCG- -5'
22948 5' -52.3 NC_005137.2 + 12654 0.68 0.933174
Target:  5'- uGCCGUauagugggcguguuGGGGCCaaauugcaguuugaGCAGCGCGucGGaacgGCGCg -3'
miRNA:   3'- -CGGCA--------------UCCUGG--------------UGUCGUGU--UCa---UGCG- -5'
22948 5' -52.3 NC_005137.2 + 111044 0.68 0.93624
Target:  5'- gGCCGUaAGGGCCguugACAGCA-AGGUcacCGCu -3'
miRNA:   3'- -CGGCA-UCCUGG----UGUCGUgUUCAu--GCG- -5'
22948 5' -52.3 NC_005137.2 + 122936 0.68 0.945807
Target:  5'- gGCCGUGGGGCa--AGUAUAaaAGgcguUGCGCg -3'
miRNA:   3'- -CGGCAUCCUGgugUCGUGU--UC----AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 38334 0.67 0.950216
Target:  5'- cUCGUAGGGCguaaGCAGCGCGuugacAGUgGCGUu -3'
miRNA:   3'- cGGCAUCCUGg---UGUCGUGU-----UCA-UGCG- -5'
22948 5' -52.3 NC_005137.2 + 67990 0.69 0.90789
Target:  5'- cGUCGUuGG-CCAC-GCGCGAGcaaUACGCu -3'
miRNA:   3'- -CGGCAuCCuGGUGuCGUGUUC---AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 95588 0.69 0.894788
Target:  5'- cGCCGUuuuGCCGCccGCGCAcuGUGCGCg -3'
miRNA:   3'- -CGGCAuccUGGUGu-CGUGUu-CAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 87417 0.69 0.887869
Target:  5'- gGCUGUGuGuGACUugGGCaACGaccAGUACGCa -3'
miRNA:   3'- -CGGCAU-C-CUGGugUCG-UGU---UCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 35539 0.73 0.698151
Target:  5'- gGCCGUGGGcaaCACGGCGCuuGUcaagacACGCa -3'
miRNA:   3'- -CGGCAUCCug-GUGUCGUGuuCA------UGCG- -5'
22948 5' -52.3 NC_005137.2 + 77372 0.73 0.749075
Target:  5'- cGCUaacuGGACCGCuuGCaACGAGUGCGCc -3'
miRNA:   3'- -CGGcau-CCUGGUGu-CG-UGUUCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 68672 0.72 0.7784
Target:  5'- cGCgCGUGgcGGAUgACAGCAUAAuaagcGUGCGCa -3'
miRNA:   3'- -CG-GCAU--CCUGgUGUCGUGUU-----CAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 108144 0.71 0.824361
Target:  5'- gGUCGUcGGGCgGCGGCGgCGucGGUAUGCg -3'
miRNA:   3'- -CGGCAuCCUGgUGUCGU-GU--UCAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 98165 0.7 0.865693
Target:  5'- aGCCGgcGcgcGGCCACAG-AUAAGaUACGCg -3'
miRNA:   3'- -CGGCauC---CUGGUGUCgUGUUC-AUGCG- -5'
22948 5' -52.3 NC_005137.2 + 50629 0.7 0.873317
Target:  5'- cGCCGgcacGGGGCUGCAGCACcuugcCGCc -3'
miRNA:   3'- -CGGCa---UCCUGGUGUCGUGuucauGCG- -5'
22948 5' -52.3 NC_005137.2 + 46048 0.69 0.887164
Target:  5'- cGCCaacgAGGuuaugccGCCGCuGCACAGcGUGCGCc -3'
miRNA:   3'- -CGGca--UCC-------UGGUGuCGUGUU-CAUGCG- -5'
22948 5' -52.3 NC_005137.2 + 109026 0.69 0.887869
Target:  5'- cGCgCGUGGGuugGCUACAGCAgGAcuuUACGCc -3'
miRNA:   3'- -CG-GCAUCC---UGGUGUCGUgUUc--AUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.