Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22949 | 3' | -51.8 | NC_005137.2 | + | 16763 | 0.66 | 0.980045 |
Target: 5'- aCAAGCU-UGCUgacGGCACcGcGUUUGCCa -3' miRNA: 3'- aGUUUGGcACGG---UCGUGuC-CAAACGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 59474 | 0.66 | 0.980045 |
Target: 5'- ---cACCG-GCacgaUAGUACAGGgaUGCCg -3' miRNA: 3'- aguuUGGCaCG----GUCGUGUCCaaACGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 98722 | 0.66 | 0.975107 |
Target: 5'- aCAGugCGUGauguaCCAGCGCG---UUGCCa -3' miRNA: 3'- aGUUugGCAC-----GGUCGUGUccaAACGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 114355 | 0.67 | 0.965442 |
Target: 5'- aUCAAACCGauUGUCGGCAaucgcuuccauaAGGU-UGCUg -3' miRNA: 3'- -AGUUUGGC--ACGGUCGUg-----------UCCAaACGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 43767 | 0.69 | 0.920412 |
Target: 5'- aCGAACgcuacuaccagCGcGCCAGC--GGGUUUGCCg -3' miRNA: 3'- aGUUUG-----------GCaCGGUCGugUCCAAACGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 99410 | 0.69 | 0.914427 |
Target: 5'- gUUAAACUGUGCCcguGGCaACGGGgcgcgcGCCc -3' miRNA: 3'- -AGUUUGGCACGG---UCG-UGUCCaaa---CGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 19705 | 0.69 | 0.894924 |
Target: 5'- uUCAGACgGguuggcgGCgGGCACAGaacgccuucGUUUGCCu -3' miRNA: 3'- -AGUUUGgCa------CGgUCGUGUC---------CAAACGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 48621 | 0.69 | 0.894924 |
Target: 5'- uUCGAuacccgucACgGUGCC-GUACAGGUcagGCCa -3' miRNA: 3'- -AGUU--------UGgCACGGuCGUGUCCAaa-CGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 50621 | 0.7 | 0.880663 |
Target: 5'- cUCAuACac-GCCGGCACGGGgcUGCa -3' miRNA: 3'- -AGUuUGgcaCGGUCGUGUCCaaACGg -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 74276 | 0.72 | 0.805327 |
Target: 5'- cCGuGCCGUGCCGGCGCGaaa--GCCa -3' miRNA: 3'- aGUuUGGCACGGUCGUGUccaaaCGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 74126 | 0.72 | 0.795982 |
Target: 5'- uUCGcGCCG-GCaCGGCACGGG-UUGCa -3' miRNA: 3'- -AGUuUGGCaCG-GUCGUGUCCaAACGg -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 21717 | 0.72 | 0.776818 |
Target: 5'- uUCAAACUGUaCgGGUACAGGg-UGCCg -3' miRNA: 3'- -AGUUUGGCAcGgUCGUGUCCaaACGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 78726 | 0.74 | 0.695342 |
Target: 5'- gCAAACCuGUGCUGGCAC-GGUUUGaCg -3' miRNA: 3'- aGUUUGG-CACGGUCGUGuCCAAACgG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 104226 | 0.74 | 0.663548 |
Target: 5'- aCGAGCCG-GCCAGCACgacgaAGGc--GCCa -3' miRNA: 3'- aGUUUGGCaCGGUCGUG-----UCCaaaCGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 93470 | 0.76 | 0.588824 |
Target: 5'- aCGGugCGcGCCAGCGCc-GUUUGCCg -3' miRNA: 3'- aGUUugGCaCGGUCGUGucCAAACGG- -5' |
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22949 | 3' | -51.8 | NC_005137.2 | + | 78571 | 1.14 | 0.002728 |
Target: 5'- gUCAAACCGUGCCAGCACAGGUUUGCCa -3' miRNA: 3'- -AGUUUGGCACGGUCGUGUCCAAACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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