miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22949 5' -56.3 NC_005137.2 + 78605 1.05 0.003865
Target:  5'- aACGUCAAACGCGCGCCGGCGACGAAAu -3'
miRNA:   3'- -UGCAGUUUGCGCGCGGCCGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 124954 0.77 0.308241
Target:  5'- uGCGaUGAACGCgGCGCCGGUGAUGggGc -3'
miRNA:   3'- -UGCaGUUUGCG-CGCGGCCGCUGCuuU- -5'
22949 5' -56.3 NC_005137.2 + 61364 0.76 0.345676
Target:  5'- uGCGUCAAAUGgGCgGCCGGCGAguUGAu- -3'
miRNA:   3'- -UGCAGUUUGCgCG-CGGCCGCU--GCUuu -5'
22949 5' -56.3 NC_005137.2 + 67549 0.75 0.386262
Target:  5'- gGCGgcaCAAACGCGCGCCGaGCGG-GAAc -3'
miRNA:   3'- -UGCa--GUUUGCGCGCGGC-CGCUgCUUu -5'
22949 5' -56.3 NC_005137.2 + 32883 0.74 0.420916
Target:  5'- cGCGUaCGacGACGCGguaGCCGGCGGCGGu- -3'
miRNA:   3'- -UGCA-GU--UUGCGCg--CGGCCGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 97969 0.74 0.420916
Target:  5'- cGCGUCAuuguaggcaaAACGgGCGCgCGGCGugGGu- -3'
miRNA:   3'- -UGCAGU----------UUGCgCGCG-GCCGCugCUuu -5'
22949 5' -56.3 NC_005137.2 + 22557 0.74 0.448104
Target:  5'- aGCGUCAGGCGCGCcauguuGCCGGUG-CGu-- -3'
miRNA:   3'- -UGCAGUUUGCGCG------CGGCCGCuGCuuu -5'
22949 5' -56.3 NC_005137.2 + 5061 0.73 0.457382
Target:  5'- gACGUCGuGCGUGCGCCG-CGACa--- -3'
miRNA:   3'- -UGCAGUuUGCGCGCGGCcGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 130414 0.72 0.544981
Target:  5'- uUGUCAAGCG-GCGgUGGCGGCGGc- -3'
miRNA:   3'- uGCAGUUUGCgCGCgGCCGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 57251 0.71 0.564227
Target:  5'- gGCGUCAucguuuuGGCGCGC-CCGuGCGugGAc- -3'
miRNA:   3'- -UGCAGU-------UUGCGCGcGGC-CGCugCUuu -5'
22949 5' -56.3 NC_005137.2 + 17291 0.71 0.565245
Target:  5'- -aGUU--GCGCGUGCUGGUGACGGc- -3'
miRNA:   3'- ugCAGuuUGCGCGCGGCCGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 43977 0.71 0.565245
Target:  5'- cGCGUUcGACGgGCGCgGGCGGCu--- -3'
miRNA:   3'- -UGCAGuUUGCgCGCGgCCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 26682 0.71 0.595981
Target:  5'- cACGUgCGAACGUuugaugGCGCugaaCGGCGGCGAAGa -3'
miRNA:   3'- -UGCA-GUUUGCG------CGCG----GCCGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 79655 0.7 0.656942
Target:  5'- cGCGUUAAACacgguuugugcagGCGCGgCGGCgGACGAc- -3'
miRNA:   3'- -UGCAGUUUG-------------CGCGCgGCCG-CUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 78660 0.7 0.668281
Target:  5'- gUGUCAAAUGCGUGUCGGCuaauaGCGGc- -3'
miRNA:   3'- uGCAGUUUGCGCGCGGCCGc----UGCUuu -5'
22949 5' -56.3 NC_005137.2 + 95650 0.7 0.668281
Target:  5'- cACGUCAgcGAUGCGC-CCGuGCGGCGc-- -3'
miRNA:   3'- -UGCAGU--UUGCGCGcGGC-CGCUGCuuu -5'
22949 5' -56.3 NC_005137.2 + 96465 0.69 0.678558
Target:  5'- -aGUCcacacuUGCGCGCCGGCGugucgGCGAAu -3'
miRNA:   3'- ugCAGuuu---GCGCGCGGCCGC-----UGCUUu -5'
22949 5' -56.3 NC_005137.2 + 112556 0.69 0.688796
Target:  5'- ---aCAAugGCGCGCCGuGCG-CGAu- -3'
miRNA:   3'- ugcaGUUugCGCGCGGC-CGCuGCUuu -5'
22949 5' -56.3 NC_005137.2 + 71532 0.69 0.72319
Target:  5'- uCGUCAAACGcCGCGUcgccgacagucaacgCGGcCGACGAc- -3'
miRNA:   3'- uGCAGUUUGC-GCGCG---------------GCC-GCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 45072 0.68 0.748887
Target:  5'- gGCGUC-AugGUaCGCC-GCGACGAGAa -3'
miRNA:   3'- -UGCAGuUugCGcGCGGcCGCUGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.