miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22949 5' -56.3 NC_005137.2 + 1655 0.67 0.80521
Target:  5'- cGCGUCG-----GCGCCGcGCGGCGGAAu -3'
miRNA:   3'- -UGCAGUuugcgCGCGGC-CGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 5061 0.73 0.457382
Target:  5'- gACGUCGuGCGUGCGCCG-CGACa--- -3'
miRNA:   3'- -UGCAGUuUGCGCGCGGCcGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 17291 0.71 0.565245
Target:  5'- -aGUU--GCGCGUGCUGGUGACGGc- -3'
miRNA:   3'- ugCAGuuUGCGCGCGGCCGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 22557 0.74 0.448104
Target:  5'- aGCGUCAGGCGCGCcauguuGCCGGUG-CGu-- -3'
miRNA:   3'- -UGCAGUUUGCGCG------CGGCCGCuGCuuu -5'
22949 5' -56.3 NC_005137.2 + 26682 0.71 0.595981
Target:  5'- cACGUgCGAACGUuugaugGCGCugaaCGGCGGCGAAGa -3'
miRNA:   3'- -UGCA-GUUUGCG------CGCG----GCCGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 28046 0.66 0.86354
Target:  5'- aACGUgGcgcGACGCGCGCUGGgaugcgccaGACGGc- -3'
miRNA:   3'- -UGCAgU---UUGCGCGCGGCCg--------CUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 30006 0.67 0.814089
Target:  5'- gGCGUUgagAAGCGCGCGaCCcuuuuuuaGcGCGGCGGAAa -3'
miRNA:   3'- -UGCAG---UUUGCGCGC-GG--------C-CGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 32883 0.74 0.420916
Target:  5'- cGCGUaCGacGACGCGguaGCCGGCGGCGGu- -3'
miRNA:   3'- -UGCA-GU--UUGCGCg--CGGCCGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 33028 0.67 0.80521
Target:  5'- cGCGUCGucguACGCGCGuuGG-GACu--- -3'
miRNA:   3'- -UGCAGUu---UGCGCGCggCCgCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 42068 0.66 0.855792
Target:  5'- cGCGUacauuuuaaaaCAAGCGUGC-CCGGCGgaaacagacaGCGAAAg -3'
miRNA:   3'- -UGCA-----------GUUUGCGCGcGGCCGC----------UGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 42826 0.66 0.871076
Target:  5'- cCGUCGAuUGCGCGCUuGGCGuCGc-- -3'
miRNA:   3'- uGCAGUUuGCGCGCGG-CCGCuGCuuu -5'
22949 5' -56.3 NC_005137.2 + 43977 0.71 0.565245
Target:  5'- cGCGUUcGACGgGCGCgGGCGGCu--- -3'
miRNA:   3'- -UGCAGuUUGCgCGCGgCCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 45072 0.68 0.748887
Target:  5'- gGCGUC-AugGUaCGCC-GCGACGAGAa -3'
miRNA:   3'- -UGCAGuUugCGcGCGGcCGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 46163 0.66 0.871076
Target:  5'- gUGUCGGACGUGCGCaucaacaaGuGCGACa--- -3'
miRNA:   3'- uGCAGUUUGCGCGCGg-------C-CGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 48915 0.66 0.878392
Target:  5'- cGCGUCcAACGauCGCGCCgccuuguucGGCGACa--- -3'
miRNA:   3'- -UGCAGuUUGC--GCGCGG---------CCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 55577 0.66 0.839681
Target:  5'- gGCGgacgCGGGCG-GCGCCGugcGCGugGAGc -3'
miRNA:   3'- -UGCa---GUUUGCgCGCGGC---CGCugCUUu -5'
22949 5' -56.3 NC_005137.2 + 57251 0.71 0.564227
Target:  5'- gGCGUCAucguuuuGGCGCGC-CCGuGCGugGAc- -3'
miRNA:   3'- -UGCAGU-------UUGCGCGcGGC-CGCugCUuu -5'
22949 5' -56.3 NC_005137.2 + 59503 0.66 0.86354
Target:  5'- cCGcCAGACGa--GCCGGCuGACGAGu -3'
miRNA:   3'- uGCaGUUUGCgcgCGGCCG-CUGCUUu -5'
22949 5' -56.3 NC_005137.2 + 61364 0.76 0.345676
Target:  5'- uGCGUCAAAUGgGCgGCCGGCGAguUGAu- -3'
miRNA:   3'- -UGCAGUUUGCgCG-CGGCCGCU--GCUuu -5'
22949 5' -56.3 NC_005137.2 + 63273 0.66 0.839681
Target:  5'- --uUCAAGC-CGCGaCCGGCG-CGAAGc -3'
miRNA:   3'- ugcAGUUUGcGCGC-GGCCGCuGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.