miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22949 5' -56.3 NC_005137.2 + 130854 0.66 0.842967
Target:  5'- cGCGUUGGACGCGCaGCCcGCGccugaauuguacgccGCGGAc -3'
miRNA:   3'- -UGCAGUUUGCGCG-CGGcCGC---------------UGCUUu -5'
22949 5' -56.3 NC_005137.2 + 130414 0.72 0.544981
Target:  5'- uUGUCAAGCG-GCGgUGGCGGCGGc- -3'
miRNA:   3'- uGCAGUUUGCgCGCgGCCGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 124954 0.77 0.308241
Target:  5'- uGCGaUGAACGCgGCGCCGGUGAUGggGc -3'
miRNA:   3'- -UGCaGUUUGCG-CGCGGCCGCUGCuuU- -5'
22949 5' -56.3 NC_005137.2 + 123345 0.66 0.855792
Target:  5'- gACGccaCAAACGaCGUGCCGgGCGGCa--- -3'
miRNA:   3'- -UGCa--GUUUGC-GCGCGGC-CGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 114820 0.66 0.86354
Target:  5'- uCGUCAGAUGUcauagGCgGCUGGCGcACGAu- -3'
miRNA:   3'- uGCAGUUUGCG-----CG-CGGCCGC-UGCUuu -5'
22949 5' -56.3 NC_005137.2 + 114260 0.66 0.855792
Target:  5'- aGCGgugCAGACGCacgcgGCGCuCGGCGAacUGAu- -3'
miRNA:   3'- -UGCa--GUUUGCG-----CGCG-GCCGCU--GCUuu -5'
22949 5' -56.3 NC_005137.2 + 112556 0.69 0.688796
Target:  5'- ---aCAAugGCGCGCCGuGCG-CGAu- -3'
miRNA:   3'- ugcaGUUugCGCGCGGC-CGCuGCUuu -5'
22949 5' -56.3 NC_005137.2 + 110578 0.67 0.814089
Target:  5'- uGCGUCuuGGCGCGCccaucCUGuGCGACGAc- -3'
miRNA:   3'- -UGCAGu-UUGCGCGc----GGC-CGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 108146 0.68 0.768181
Target:  5'- uCGUCGGGCG-GCGgCGGCGuCGGu- -3'
miRNA:   3'- uGCAGUUUGCgCGCgGCCGCuGCUuu -5'
22949 5' -56.3 NC_005137.2 + 106389 0.68 0.777647
Target:  5'- aACGUCAuguuuGACGaCGCGUCGGUcauGugGAu- -3'
miRNA:   3'- -UGCAGU-----UUGC-GCGCGGCCG---CugCUuu -5'
22949 5' -56.3 NC_005137.2 + 104235 0.66 0.847836
Target:  5'- gGCGUCAcAACGa--GCCGGCcagcacGACGAAGg -3'
miRNA:   3'- -UGCAGU-UUGCgcgCGGCCG------CUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 100228 0.66 0.855792
Target:  5'- cACGU---GCGCGCGCC-GCGGCa--- -3'
miRNA:   3'- -UGCAguuUGCGCGCGGcCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 100144 0.66 0.878392
Target:  5'- gGCGguugguGCGUGCGCUgcuGGCGcACGAAGa -3'
miRNA:   3'- -UGCaguu--UGCGCGCGG---CCGC-UGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 98356 0.66 0.87767
Target:  5'- cCGUCAcgcuUGUGCGCCGguuuggcgccgucGCGACGGGc -3'
miRNA:   3'- uGCAGUuu--GCGCGCGGC-------------CGCUGCUUu -5'
22949 5' -56.3 NC_005137.2 + 97969 0.74 0.420916
Target:  5'- cGCGUCAuuguaggcaaAACGgGCGCgCGGCGugGGu- -3'
miRNA:   3'- -UGCAGU----------UUGCgCGCG-GCCGCugCUuu -5'
22949 5' -56.3 NC_005137.2 + 96789 0.66 0.878392
Target:  5'- gUGUCAAAgGUGCGUCaGCGcCGAu- -3'
miRNA:   3'- uGCAGUUUgCGCGCGGcCGCuGCUuu -5'
22949 5' -56.3 NC_005137.2 + 96573 0.67 0.8228
Target:  5'- cGCGgCGGGCGCGuCGCCGcGCGgguaGCGGu- -3'
miRNA:   3'- -UGCaGUUUGCGC-GCGGC-CGC----UGCUuu -5'
22949 5' -56.3 NC_005137.2 + 96465 0.69 0.678558
Target:  5'- -aGUCcacacuUGCGCGCCGGCGugucgGCGAAu -3'
miRNA:   3'- ugCAGuuu---GCGCGCGGCCGC-----UGCUUu -5'
22949 5' -56.3 NC_005137.2 + 95752 0.68 0.777647
Target:  5'- cACGUCGcGCacaGUGCGCgGGCGGCa--- -3'
miRNA:   3'- -UGCAGUuUG---CGCGCGgCCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 95650 0.7 0.668281
Target:  5'- cACGUCAgcGAUGCGC-CCGuGCGGCGc-- -3'
miRNA:   3'- -UGCAGU--UUGCGCGcGGC-CGCUGCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.