miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22949 5' -56.3 NC_005137.2 + 33028 0.67 0.80521
Target:  5'- cGCGUCGucguACGCGCGuuGG-GACu--- -3'
miRNA:   3'- -UGCAGUu---UGCGCGCggCCgCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 1655 0.67 0.80521
Target:  5'- cGCGUCG-----GCGCCGcGCGGCGGAAu -3'
miRNA:   3'- -UGCAGUuugcgCGCGGC-CGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 30006 0.67 0.814089
Target:  5'- gGCGUUgagAAGCGCGCGaCCcuuuuuuaGcGCGGCGGAAa -3'
miRNA:   3'- -UGCAG---UUUGCGCGC-GG--------C-CGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 96573 0.67 0.8228
Target:  5'- cGCGgCGGGCGCGuCGCCGcGCGgguaGCGGu- -3'
miRNA:   3'- -UGCaGUUUGCGC-GCGGC-CGC----UGCUuu -5'
22949 5' -56.3 NC_005137.2 + 71362 0.67 0.796171
Target:  5'- uCGUCGGcCGCGUugacuGUCGGCGACGc-- -3'
miRNA:   3'- uGCAGUUuGCGCG-----CGGCCGCUGCuuu -5'
22949 5' -56.3 NC_005137.2 + 71980 0.67 0.80521
Target:  5'- gACGUaCAuGCGCguaGCGCaCGGCGACa--- -3'
miRNA:   3'- -UGCA-GUuUGCG---CGCG-GCCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 110578 0.67 0.814089
Target:  5'- uGCGUCuuGGCGCGCccaucCUGuGCGACGAc- -3'
miRNA:   3'- -UGCAGu-UUGCGCGc----GGC-CGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 106389 0.68 0.777647
Target:  5'- aACGUCAuguuuGACGaCGCGUCGGUcauGugGAu- -3'
miRNA:   3'- -UGCAGU-----UUGC-GCGCGGCCG---CugCUuu -5'
22949 5' -56.3 NC_005137.2 + 108146 0.68 0.768181
Target:  5'- uCGUCGGGCG-GCGgCGGCGuCGGu- -3'
miRNA:   3'- uGCAGUUUGCgCGCgGCCGCuGCUuu -5'
22949 5' -56.3 NC_005137.2 + 95504 0.68 0.758592
Target:  5'- gGCGcaUCGcuGACGUG-GCCGGUGGCGAc- -3'
miRNA:   3'- -UGC--AGU--UUGCGCgCGGCCGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 71094 0.68 0.748887
Target:  5'- aAUGUCGGGCGgaGCGuuGGCGGCc--- -3'
miRNA:   3'- -UGCAGUUUGCg-CGCggCCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 95752 0.68 0.777647
Target:  5'- cACGUCGcGCacaGUGCGCgGGCGGCa--- -3'
miRNA:   3'- -UGCAGUuUG---CGCGCGgCCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 72952 0.68 0.768181
Target:  5'- gACGgc-AGCGCGCGCCGccaacGCGugGGu- -3'
miRNA:   3'- -UGCaguUUGCGCGCGGC-----CGCugCUuu -5'
22949 5' -56.3 NC_005137.2 + 45072 0.68 0.748887
Target:  5'- gGCGUC-AugGUaCGCC-GCGACGAGAa -3'
miRNA:   3'- -UGCAGuUugCGcGCGGcCGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 96465 0.69 0.678558
Target:  5'- -aGUCcacacuUGCGCGCCGGCGugucgGCGAAu -3'
miRNA:   3'- ugCAGuuu---GCGCGCGGCCGC-----UGCUUu -5'
22949 5' -56.3 NC_005137.2 + 71532 0.69 0.72319
Target:  5'- uCGUCAAACGcCGCGUcgccgacagucaacgCGGcCGACGAc- -3'
miRNA:   3'- uGCAGUUUGC-GCGCG---------------GCC-GCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 112556 0.69 0.688796
Target:  5'- ---aCAAugGCGCGCCGuGCG-CGAu- -3'
miRNA:   3'- ugcaGUUugCGCGCGGC-CGCuGCUuu -5'
22949 5' -56.3 NC_005137.2 + 78660 0.7 0.668281
Target:  5'- gUGUCAAAUGCGUGUCGGCuaauaGCGGc- -3'
miRNA:   3'- uGCAGUUUGCGCGCGGCCGc----UGCUuu -5'
22949 5' -56.3 NC_005137.2 + 79655 0.7 0.656942
Target:  5'- cGCGUUAAACacgguuugugcagGCGCGgCGGCgGACGAc- -3'
miRNA:   3'- -UGCAGUUUG-------------CGCGCgGCCG-CUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 95650 0.7 0.668281
Target:  5'- cACGUCAgcGAUGCGC-CCGuGCGGCGc-- -3'
miRNA:   3'- -UGCAGU--UUGCGCGcGGC-CGCUGCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.