miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22951 3' -42.6 NC_005137.2 + 74187 0.67 1
Target:  5'- uGUUCACguACAa-AGCUAGUGUGa- -3'
miRNA:   3'- uCAAGUGguUGUaaUUGAUCAUACgg -5'
22951 3' -42.6 NC_005137.2 + 18981 0.66 1
Target:  5'- cAGUaaUUACCGGCAaaugUUccaAGCguaaGGUGUGCCa -3'
miRNA:   3'- -UCA--AGUGGUUGU----AA---UUGa---UCAUACGG- -5'
22951 3' -42.6 NC_005137.2 + 18779 0.66 1
Target:  5'- aAGUcgCAUgAACAUUGACgccaAGUcgGCUg -3'
miRNA:   3'- -UCAa-GUGgUUGUAAUUGa---UCAuaCGG- -5'
22951 3' -42.6 NC_005137.2 + 79786 0.66 1
Target:  5'- cGUUUauGCCAACAUcuguuGCUAGcgcgGCCg -3'
miRNA:   3'- uCAAG--UGGUUGUAau---UGAUCaua-CGG- -5'
22951 3' -42.6 NC_005137.2 + 65439 0.67 1
Target:  5'- gAGUU-GCCGAguuacaaAUUAACUAGU-UGCCa -3'
miRNA:   3'- -UCAAgUGGUUg------UAAUUGAUCAuACGG- -5'
22951 3' -42.6 NC_005137.2 + 41560 0.67 1
Target:  5'- uGUUCgACCAaggcuccgaucGCGUUGAacccGUGUGCCu -3'
miRNA:   3'- uCAAG-UGGU-----------UGUAAUUgau-CAUACGG- -5'
22951 3' -42.6 NC_005137.2 + 82138 0.67 1
Target:  5'- uAGUUCACCAagaccaACAcaAACUAauuUGCCu -3'
miRNA:   3'- -UCAAGUGGU------UGUaaUUGAUcauACGG- -5'
22951 3' -42.6 NC_005137.2 + 82024 0.67 1
Target:  5'- uAGUUCACCAagaccuACAcaAACUAGUucaCCa -3'
miRNA:   3'- -UCAAGUGGU------UGUaaUUGAUCAuacGG- -5'
22951 3' -42.6 NC_005137.2 + 122888 0.66 1
Target:  5'- gGGUUCACUAACGU--GCUAagcacGCCc -3'
miRNA:   3'- -UCAAGUGGUUGUAauUGAUcaua-CGG- -5'
22951 3' -42.6 NC_005137.2 + 69071 0.67 1
Target:  5'- uGUgCGCCAugGUUGGCUcguaucGGUcgGCa -3'
miRNA:   3'- uCAaGUGGUugUAAUUGA------UCAuaCGg -5'
22951 3' -42.6 NC_005137.2 + 52158 0.66 1
Target:  5'- cGUUUugCAACAUUAACaugaacggucGUGUGUUa -3'
miRNA:   3'- uCAAGugGUUGUAAUUGau--------CAUACGG- -5'
22951 3' -42.6 NC_005137.2 + 102394 0.67 0.999999
Target:  5'- ---aCACCGGuCAUUGACUGG---GCCg -3'
miRNA:   3'- ucaaGUGGUU-GUAAUUGAUCauaCGG- -5'
22951 3' -42.6 NC_005137.2 + 24183 0.67 0.999999
Target:  5'- --cUCGCUAcauACGUUGACUGGcccGUGUCa -3'
miRNA:   3'- ucaAGUGGU---UGUAAUUGAUCa--UACGG- -5'
22951 3' -42.6 NC_005137.2 + 108027 0.67 0.999999
Target:  5'- gAGUUUugCAACAacUGAUUGGgc-GCCg -3'
miRNA:   3'- -UCAAGugGUUGUa-AUUGAUCauaCGG- -5'
22951 3' -42.6 NC_005137.2 + 82269 0.68 0.999999
Target:  5'- uAGUUUguGCCGuguugGCAU--ACUAGUcuGUGCCg -3'
miRNA:   3'- -UCAAG--UGGU-----UGUAauUGAUCA--UACGG- -5'
22951 3' -42.6 NC_005137.2 + 103797 0.67 0.999999
Target:  5'- uGUUgUugUAGCAguuGCUGGUGUGCg -3'
miRNA:   3'- uCAA-GugGUUGUaauUGAUCAUACGg -5'
22951 3' -42.6 NC_005137.2 + 22627 0.68 0.999999
Target:  5'- uGUUUACCGGCGUgAGCgcGGUGcaGCCg -3'
miRNA:   3'- uCAAGUGGUUGUAaUUGa-UCAUa-CGG- -5'
22951 3' -42.6 NC_005137.2 + 90948 0.68 0.999998
Target:  5'- aGGUUUGCCGACAcga--UAGUcaucuccGUGCCa -3'
miRNA:   3'- -UCAAGUGGUUGUaauugAUCA-------UACGG- -5'
22951 3' -42.6 NC_005137.2 + 80064 0.68 0.999997
Target:  5'- cGUUgGCCuGCAgcgauucAACUAGUuugcGUGCCg -3'
miRNA:   3'- uCAAgUGGuUGUaa-----UUGAUCA----UACGG- -5'
22951 3' -42.6 NC_005137.2 + 118594 0.69 0.999984
Target:  5'- gGGUUCACCcggaau-GCUAGUuucgGCCg -3'
miRNA:   3'- -UCAAGUGGuuguaauUGAUCAua--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.