miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22951 5' -52.1 NC_005137.2 + 82252 0.66 0.97613
Target:  5'- gCAuACUAGUcuGUGCCggUGuuGGCAUAc -3'
miRNA:   3'- -GUcUGAUCA--UACGGuuGUggCCGUGU- -5'
22951 5' -52.1 NC_005137.2 + 49046 0.66 0.970506
Target:  5'- uCAGGCgaagccGCCAGCGC-GGCGCAg -3'
miRNA:   3'- -GUCUGaucauaCGGUUGUGgCCGUGU- -5'
22951 5' -52.1 NC_005137.2 + 35173 0.66 0.967037
Target:  5'- aGGugUGGUcGUGCCGggcgucaugucucGCAaCGGCACGc -3'
miRNA:   3'- gUCugAUCA-UACGGU-------------UGUgGCCGUGU- -5'
22951 5' -52.1 NC_005137.2 + 36016 0.67 0.956531
Target:  5'- aCGGACgaaauuUAUGUgAACACgGGCGCGg -3'
miRNA:   3'- -GUCUGauc---AUACGgUUGUGgCCGUGU- -5'
22951 5' -52.1 NC_005137.2 + 65693 0.67 0.943476
Target:  5'- -uGAC-GGUGUGCgGuauaACCGGCACGu -3'
miRNA:   3'- guCUGaUCAUACGgUug--UGGCCGUGU- -5'
22951 5' -52.1 NC_005137.2 + 63196 0.68 0.918933
Target:  5'- uUAGACUAaagcuGUGgaauaauaagaagcuUGCCGacACGCCGGCGCc -3'
miRNA:   3'- -GUCUGAU-----CAU---------------ACGGU--UGUGGCCGUGu -5'
22951 5' -52.1 NC_005137.2 + 93759 0.69 0.89724
Target:  5'- gGGAcCUGGUGga-CGAUACUGGCGCAa -3'
miRNA:   3'- gUCU-GAUCAUacgGUUGUGGCCGUGU- -5'
22951 5' -52.1 NC_005137.2 + 125001 0.69 0.883105
Target:  5'- uCGGGCgGG-AUGCC-GCACCGGCGa- -3'
miRNA:   3'- -GUCUGaUCaUACGGuUGUGGCCGUgu -5'
22951 5' -52.1 NC_005137.2 + 25326 0.69 0.875668
Target:  5'- -cGGCguggGGUGUGUCAACGUCGGaCACAa -3'
miRNA:   3'- guCUGa---UCAUACGGUUGUGGCC-GUGU- -5'
22951 5' -52.1 NC_005137.2 + 78058 0.7 0.848633
Target:  5'- aAGACguucaacuuUGCCGGCACCGGC-CAc -3'
miRNA:   3'- gUCUGaucau----ACGGUUGUGGCCGuGU- -5'
22951 5' -52.1 NC_005137.2 + 96291 0.71 0.808156
Target:  5'- uCGGACgcGUGcauucGCCGacACGCCGGCGCGc -3'
miRNA:   3'- -GUCUGauCAUa----CGGU--UGUGGCCGUGU- -5'
22951 5' -52.1 NC_005137.2 + 31374 0.73 0.708733
Target:  5'- uCAaGCUGGUGUGCgCGAcCGCUGGUACAa -3'
miRNA:   3'- -GUcUGAUCAUACG-GUU-GUGGCCGUGU- -5'
22951 5' -52.1 NC_005137.2 + 82087 0.83 0.23726
Target:  5'- --aACUAGUAUGCCAACACCGGCn-- -3'
miRNA:   3'- gucUGAUCAUACGGUUGUGGCCGugu -5'
22951 5' -52.1 NC_005137.2 + 82108 1.09 0.004695
Target:  5'- aCAGACUAGUAUGCCAACACCGGCACAa -3'
miRNA:   3'- -GUCUGAUCAUACGGUUGUGGCCGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.