miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22952 3' -56.5 NC_005137.2 + 57427 0.66 0.867298
Target:  5'- uUGGCCAGCaaCGCGUuGGUGGcCGaaaUGCa -3'
miRNA:   3'- -ACCGGUUG--GCGUA-CCGCCuGUa--ACGc -5'
22952 3' -56.5 NC_005137.2 + 55516 0.66 0.859637
Target:  5'- uUGGCCA---GCGUGGCcaagGGGCAcgUGCa -3'
miRNA:   3'- -ACCGGUuggCGUACCG----CCUGUa-ACGc -5'
22952 3' -56.5 NC_005137.2 + 48784 0.66 0.859637
Target:  5'- cGGCgCcGCacaGCGUGuGCGGcacuACAUUGCGc -3'
miRNA:   3'- aCCG-GuUGg--CGUAC-CGCC----UGUAACGC- -5'
22952 3' -56.5 NC_005137.2 + 35673 0.66 0.846945
Target:  5'- cGGCCGGCCGgaacgauugcguagaCGUGGUGGuGCuggGCa -3'
miRNA:   3'- aCCGGUUGGC---------------GUACCGCC-UGuaaCGc -5'
22952 3' -56.5 NC_005137.2 + 93277 0.66 0.846945
Target:  5'- cGGCCAGCCGCcgguuUuugcuaccuugaaacGGCGuGACGUcaagcuguUGCGu -3'
miRNA:   3'- aCCGGUUGGCGu----A---------------CCGC-CUGUA--------ACGC- -5'
22952 3' -56.5 NC_005137.2 + 88028 0.66 0.826955
Target:  5'- cGGCC-ACCGCcgaGGCGGGCcaccacGUGg -3'
miRNA:   3'- aCCGGuUGGCGua-CCGCCUGuaa---CGC- -5'
22952 3' -56.5 NC_005137.2 + 112581 0.66 0.824381
Target:  5'- cGGCCGACUccaacgccguacuuGCAcaaUGGCGcGCcgUGCGc -3'
miRNA:   3'- aCCGGUUGG--------------CGU---ACCGCcUGuaACGC- -5'
22952 3' -56.5 NC_005137.2 + 17461 0.67 0.818311
Target:  5'- cGGCCGuAUCGCAggguguggggcUGGUGGugG-UGCa -3'
miRNA:   3'- aCCGGU-UGGCGU-----------ACCGCCugUaACGc -5'
22952 3' -56.5 NC_005137.2 + 116369 0.67 0.818311
Target:  5'- gGGCUugagaAACCGCugaucGGUGGACAcuucuUUGCa -3'
miRNA:   3'- aCCGG-----UUGGCGua---CCGCCUGU-----AACGc -5'
22952 3' -56.5 NC_005137.2 + 96405 0.67 0.817437
Target:  5'- cGcGCCGACCGCuacccGcGCGGcgacgcgcccgccGCGUUGCGu -3'
miRNA:   3'- aC-CGGUUGGCGua---C-CGCC-------------UGUAACGC- -5'
22952 3' -56.5 NC_005137.2 + 73952 0.67 0.800511
Target:  5'- uUGGCCAACCuGCAgcaggccgUGGCGaACGagGCu -3'
miRNA:   3'- -ACCGGUUGG-CGU--------ACCGCcUGUaaCGc -5'
22952 3' -56.5 NC_005137.2 + 63000 0.67 0.800511
Target:  5'- cGGCgGACC-CAUGGUGcGGCGccgGCGu -3'
miRNA:   3'- aCCGgUUGGcGUACCGC-CUGUaa-CGC- -5'
22952 3' -56.5 NC_005137.2 + 41627 0.67 0.791372
Target:  5'- aGGUCAAcguCCGCu--GCGGACAgcgcgUGCGc -3'
miRNA:   3'- aCCGGUU---GGCGuacCGCCUGUa----ACGC- -5'
22952 3' -56.5 NC_005137.2 + 34588 0.67 0.775502
Target:  5'- cGGCCGACgcguuguaucaaaGCAccgaauUGGCGGACAauuugauuggcgguUUGCGc -3'
miRNA:   3'- aCCGGUUGg------------CGU------ACCGCCUGU--------------AACGC- -5'
22952 3' -56.5 NC_005137.2 + 117727 0.67 0.772661
Target:  5'- -cGUCAGCCGCAccGGCGGcGCAcuUUGCc -3'
miRNA:   3'- acCGGUUGGCGUa-CCGCC-UGU--AACGc -5'
22952 3' -56.5 NC_005137.2 + 106857 0.67 0.772661
Target:  5'- cGGCguuugCGGCUGCggugGUGGCGGGCAcgGCc -3'
miRNA:   3'- aCCG-----GUUGGCG----UACCGCCUGUaaCGc -5'
22952 3' -56.5 NC_005137.2 + 79888 0.68 0.763108
Target:  5'- cGGCCAuugcgUCGCAauuugcGGCGGGCAgcgGCa -3'
miRNA:   3'- aCCGGUu----GGCGUa-----CCGCCUGUaa-CGc -5'
22952 3' -56.5 NC_005137.2 + 27574 0.68 0.740699
Target:  5'- gGGCCAgcuguuacagcGCUGCAgcggccgcuacuuuUGGcCGGACGgcgUGCGu -3'
miRNA:   3'- aCCGGU-----------UGGCGU--------------ACC-GCCUGUa--ACGC- -5'
22952 3' -56.5 NC_005137.2 + 33767 0.68 0.723799
Target:  5'- aUGGCCAuugUGCGcGGCGG-CGUUGUGc -3'
miRNA:   3'- -ACCGGUug-GCGUaCCGCCuGUAACGC- -5'
22952 3' -56.5 NC_005137.2 + 106568 0.69 0.672912
Target:  5'- cGGUCAAUa-CAUGGUGGACAUUuacgGCGc -3'
miRNA:   3'- aCCGGUUGgcGUACCGCCUGUAA----CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.