miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 44281 0.66 0.954478
Target:  5'- -aGAGCguuGCGCGCuuucugcauggcuaaGUcuucgUCGCCCGCGUUu -3'
miRNA:   3'- gaUUUG---UGCGCG---------------CAa----AGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 122417 0.66 0.934701
Target:  5'- gCUGuuAAgACGCGgGUUUUGCUgcagCGCGCg -3'
miRNA:   3'- -GAU--UUgUGCGCgCAAAGCGG----GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 71977 0.66 0.934701
Target:  5'- aCUGAcguACAUGCGCGUagCGCaCgGCGaCa -3'
miRNA:   3'- -GAUU---UGUGCGCGCAaaGCG-GgCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 49285 0.66 0.934701
Target:  5'- -----gGCGCuuuGCGUUUCGaCCCGCacGCUa -3'
miRNA:   3'- gauuugUGCG---CGCAAAGC-GGGCG--CGG- -5'
22953 3' -54.1 NC_005137.2 + 7176 0.66 0.936693
Target:  5'- ----uCGCGCGCGUUgcagCGCauuucgaaccggcgCGUGCCg -3'
miRNA:   3'- gauuuGUGCGCGCAAa---GCGg-------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 32799 0.66 0.939608
Target:  5'- -gGAACACaGCGuCGaauacgUGCCCGUGCg -3'
miRNA:   3'- gaUUUGUG-CGC-GCaaa---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 2173 0.66 0.94427
Target:  5'- -cGAGCGCGCGCuucaucaaGUUUaGUuuGCGCg -3'
miRNA:   3'- gaUUUGUGCGCG--------CAAAgCGggCGCGg -5'
22953 3' -54.1 NC_005137.2 + 31241 0.66 0.94427
Target:  5'- uUGAACAUGgcCGCG--UCGUgCGCGCUc -3'
miRNA:   3'- gAUUUGUGC--GCGCaaAGCGgGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 42516 0.66 0.952872
Target:  5'- -----aGCGCGCuaaucgcUCGCCCGC-CCg -3'
miRNA:   3'- gauuugUGCGCGcaa----AGCGGGCGcGG- -5'
22953 3' -54.1 NC_005137.2 + 61557 0.66 0.948259
Target:  5'- -aGAACGCG-GCGUUucuuacgUCGgCCGCcaacGCCa -3'
miRNA:   3'- gaUUUGUGCgCGCAA-------AGCgGGCG----CGG- -5'
22953 3' -54.1 NC_005137.2 + 49684 0.67 0.912621
Target:  5'- -cAAugGCGCGCGg--CGguaacuaCGCGCCg -3'
miRNA:   3'- gaUUugUGCGCGCaaaGCgg-----GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 35564 0.67 0.906488
Target:  5'- -aAGACACGCac----CGCCgGCGCCa -3'
miRNA:   3'- gaUUUGUGCGcgcaaaGCGGgCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 67823 0.67 0.906488
Target:  5'- uUAGGCAUGUGCugcaaUUUCGCaaGCGCa -3'
miRNA:   3'- gAUUUGUGCGCGc----AAAGCGggCGCGg -5'
22953 3' -54.1 NC_005137.2 + 72508 0.67 0.92955
Target:  5'- aCUAGcguGCACGCggaGCGgcgcaGCUCGCGCa -3'
miRNA:   3'- -GAUU---UGUGCG---CGCaaag-CGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 106278 0.67 0.92955
Target:  5'- -cAGGCACGCGa----UGCCCcacgGCGCCa -3'
miRNA:   3'- gaUUUGUGCGCgcaaaGCGGG----CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 4439 0.67 0.918509
Target:  5'- ---uACACcCGCGUcgCGCaccuuCGCGCCg -3'
miRNA:   3'- gauuUGUGcGCGCAaaGCGg----GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 19522 0.67 0.929021
Target:  5'- -gAAACgGCGCcaggcaaacgaagGCGUUcugUGCCCGcCGCCa -3'
miRNA:   3'- gaUUUG-UGCG-------------CGCAAa--GCGGGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 96292 0.67 0.918509
Target:  5'- -cGGACGCGUGCa-UUCGCCgacacgccggCGCGCa -3'
miRNA:   3'- gaUUUGUGCGCGcaAAGCGG----------GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 7292 0.67 0.918509
Target:  5'- --cAACACGuUGCGgucgcUUUGCCCGgGCa -3'
miRNA:   3'- gauUUGUGC-GCGCa----AAGCGGGCgCGg -5'
22953 3' -54.1 NC_005137.2 + 1425 0.67 0.918509
Target:  5'- uUAAACACGCGC-UUUUGCauuuUGUGCa -3'
miRNA:   3'- gAUUUGUGCGCGcAAAGCGg---GCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.