Results 41 - 60 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22953 | 3' | -54.1 | NC_005137.2 | + | 108131 | 0.67 | 0.92955 |
Target: 5'- ---uGCGCGCGCGUcaaCGCgaccgaUCGCGCa -3' miRNA: 3'- gauuUGUGCGCGCAaa-GCG------GGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 78404 | 0.67 | 0.924153 |
Target: 5'- aUAGACACGgGCaaucgGUUUUGCUaucaugCGCGUCa -3' miRNA: 3'- gAUUUGUGCgCG-----CAAAGCGG------GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 93691 | 0.67 | 0.924153 |
Target: 5'- uUGGACACGaCGCaGUUUUcgGCCgacgcgugcauuUGCGCCg -3' miRNA: 3'- gAUUUGUGC-GCG-CAAAG--CGG------------GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 32042 | 0.67 | 0.924153 |
Target: 5'- -----gGCGUGCGggUCGUCUGUGUa -3' miRNA: 3'- gauuugUGCGCGCaaAGCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 46825 | 0.67 | 0.920796 |
Target: 5'- ---uACugGCGCGUgcuUUCgauuaaagcggcgcuGCCCuuaGCGCCg -3' miRNA: 3'- gauuUGugCGCGCA---AAG---------------CGGG---CGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 63633 | 0.67 | 0.918509 |
Target: 5'- -cGAGCACGUccgGUGUuggUUUGUCCGCGUUu -3' miRNA: 3'- gaUUUGUGCG---CGCA---AAGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 72508 | 0.67 | 0.92955 |
Target: 5'- aCUAGcguGCACGCggaGCGgcgcaGCUCGCGCa -3' miRNA: 3'- -GAUU---UGUGCG---CGCaaag-CGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 91583 | 0.67 | 0.918509 |
Target: 5'- uCUGggUGCGCGa----CGCCUGCGCg -3' miRNA: 3'- -GAUuuGUGCGCgcaaaGCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 87475 | 0.67 | 0.918509 |
Target: 5'- --cAGCuGCGC-CGUUUCGCgaCGCGCUu -3' miRNA: 3'- gauUUG-UGCGcGCAAAGCGg-GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 45262 | 0.67 | 0.906488 |
Target: 5'- --cGACGCGuCGCG---CGCCCGCGa- -3' miRNA: 3'- gauUUGUGC-GCGCaaaGCGGGCGCgg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 98186 | 0.68 | 0.900114 |
Target: 5'- -aAGAUACGCGCGaguauaaaggUUGCCUgGCGCg -3' miRNA: 3'- gaUUUGUGCGCGCaa--------AGCGGG-CGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 110791 | 0.68 | 0.900114 |
Target: 5'- aCUAAAagcgUACGCGC-UUUCGCaauCGaCGCCg -3' miRNA: 3'- -GAUUU----GUGCGCGcAAAGCGg--GC-GCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 93465 | 0.68 | 0.900114 |
Target: 5'- -cGGGCACgGUGCG---CGCCaGCGCCg -3' miRNA: 3'- gaUUUGUG-CGCGCaaaGCGGgCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 96417 | 0.68 | 0.893501 |
Target: 5'- ---uACcCGCGCGgcgacgCGCCCGcCGCg -3' miRNA: 3'- gauuUGuGCGCGCaaa---GCGGGC-GCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 55951 | 0.68 | 0.893501 |
Target: 5'- cCUGAACAcCGCGCGUUg-GCuuGgCGUg -3' miRNA: 3'- -GAUUUGU-GCGCGCAAagCGggC-GCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 50083 | 0.68 | 0.864739 |
Target: 5'- --uGACGCGCGCcuccaCGgCCGCGCa -3' miRNA: 3'- gauUUGUGCGCGcaaa-GCgGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 46680 | 0.68 | 0.864739 |
Target: 5'- -aAAGCACGCGCcaGUaugcUCGCaCGCGCg -3' miRNA: 3'- gaUUUGUGCGCG--CAa---AGCGgGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 13056 | 0.68 | 0.879573 |
Target: 5'- -cGGACACGacacCGCGUUUgCGaaaCGCGCCc -3' miRNA: 3'- gaUUUGUGC----GCGCAAA-GCgg-GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 64707 | 0.68 | 0.886653 |
Target: 5'- -------aGCGCGUgaCGUCgGCGCCg -3' miRNA: 3'- gauuugugCGCGCAaaGCGGgCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 63651 | 0.68 | 0.879573 |
Target: 5'- ----uCGCGCaucGCGUcgCGCCCGCGgUCa -3' miRNA: 3'- gauuuGUGCG---CGCAaaGCGGGCGC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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