Results 61 - 80 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22953 | 3' | -54.1 | NC_005137.2 | + | 88469 | 0.68 | 0.900114 |
Target: 5'- -gAGACugGCGCGgUUCaCCguCGCGCa -3' miRNA: 3'- gaUUUGugCGCGCaAAGcGG--GCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 93465 | 0.68 | 0.900114 |
Target: 5'- -cGGGCACgGUGCG---CGCCaGCGCCg -3' miRNA: 3'- gaUUUGUG-CGCGCaaaGCGGgCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 110791 | 0.68 | 0.900114 |
Target: 5'- aCUAAAagcgUACGCGC-UUUCGCaauCGaCGCCg -3' miRNA: 3'- -GAUUU----GUGCGCGcAAAGCGg--GC-GCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 98186 | 0.68 | 0.900114 |
Target: 5'- -aAGAUACGCGCGaguauaaaggUUGCCUgGCGCg -3' miRNA: 3'- gaUUUGUGCGCGCaa--------AGCGGG-CGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 10945 | 0.68 | 0.879573 |
Target: 5'- gCUAAGCACGaCGaCGaaggCGCCacgGUGCCa -3' miRNA: 3'- -GAUUUGUGC-GC-GCaaa-GCGGg--CGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 38803 | 0.68 | 0.879573 |
Target: 5'- --cAACGCGCGCc---UGCCCaGCGUCg -3' miRNA: 3'- gauUUGUGCGCGcaaaGCGGG-CGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 55951 | 0.68 | 0.893501 |
Target: 5'- cCUGAACAcCGCGCGUUg-GCuuGgCGUg -3' miRNA: 3'- -GAUUUGU-GCGCGCAAagCGggC-GCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 96417 | 0.68 | 0.893501 |
Target: 5'- ---uACcCGCGCGgcgacgCGCCCGcCGCg -3' miRNA: 3'- gauuUGuGCGCGCaaa---GCGGGC-GCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 64707 | 0.68 | 0.886653 |
Target: 5'- -------aGCGCGUgaCGUCgGCGCCg -3' miRNA: 3'- gauuugugCGCGCAaaGCGGgCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 13056 | 0.68 | 0.879573 |
Target: 5'- -cGGACACGacacCGCGUUUgCGaaaCGCGCCc -3' miRNA: 3'- gaUUUGUGC----GCGCAAA-GCgg-GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 63651 | 0.68 | 0.879573 |
Target: 5'- ----uCGCGCaucGCGUcgCGCCCGCGgUCa -3' miRNA: 3'- gauuuGUGCG---CGCAaaGCGGGCGC-GG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 46680 | 0.68 | 0.864739 |
Target: 5'- -aAAGCACGCGCcaGUaugcUCGCaCGCGCg -3' miRNA: 3'- gaUUUGUGCGCG--CAa---AGCGgGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 50083 | 0.68 | 0.864739 |
Target: 5'- --uGACGCGCGCcuccaCGgCCGCGCa -3' miRNA: 3'- gauUUGUGCGCGcaaa-GCgGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 73775 | 0.68 | 0.899464 |
Target: 5'- --uGGCGCGgGCGUagccucgUUCGCCaCG-GCCu -3' miRNA: 3'- gauUUGUGCgCGCA-------AAGCGG-GCgCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 69429 | 0.68 | 0.864739 |
Target: 5'- cCUAAACGCGcCGCGac-CGCgCaCGCCg -3' miRNA: 3'- -GAUUUGUGC-GCGCaaaGCGgGcGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 1663 | 0.68 | 0.872267 |
Target: 5'- uUGAACaACGCGuCGg--CGCCgCGCGgCg -3' miRNA: 3'- gAUUUG-UGCGC-GCaaaGCGG-GCGCgG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 99244 | 0.69 | 0.856996 |
Target: 5'- uUGGGCGCGCGCcccgUUGCCaCGgGCa -3' miRNA: 3'- gAUUUGUGCGCGcaa-AGCGG-GCgCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 95586 | 0.69 | 0.856996 |
Target: 5'- -----aACGC-CGUUUugcCGCCCGCGCa -3' miRNA: 3'- gauuugUGCGcGCAAA---GCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 72373 | 0.69 | 0.849043 |
Target: 5'- gCUAGuguACACGCGCaaUUCGgCgGCGCa -3' miRNA: 3'- -GAUU---UGUGCGCGcaAAGCgGgCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 39810 | 0.69 | 0.832538 |
Target: 5'- --cAACACGCGUGcaaccaaaCG-CCGCGCCa -3' miRNA: 3'- gauUUGUGCGCGCaaa-----GCgGGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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