miRNA display CGI


Results 81 - 100 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 13050 0.69 0.840888
Target:  5'- uUAuGCGCuCGUGUucggccaccuguUUCGCCCcGCGCCc -3'
miRNA:   3'- gAUuUGUGcGCGCA------------AAGCGGG-CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 13233 0.69 0.840888
Target:  5'- aCUGGugGCaaguucggGCGCGUUUCGCaaaCGCGgUg -3'
miRNA:   3'- -GAUUugUG--------CGCGCAAAGCGg--GCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 110582 0.69 0.849043
Target:  5'- ---uGCACGCucacCGUcgCGCCCGuUGCCa -3'
miRNA:   3'- gauuUGUGCGc---GCAaaGCGGGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 5405 0.69 0.849043
Target:  5'- ---uGCGcCGCGCGUUUCGagCgGCGCg -3'
miRNA:   3'- gauuUGU-GCGCGCAAAGCg-GgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 99244 0.69 0.856996
Target:  5'- uUGGGCGCGCGCcccgUUGCCaCGgGCa -3'
miRNA:   3'- gAUUUGUGCGCGcaa-AGCGG-GCgCGg -5'
22953 3' -54.1 NC_005137.2 + 95586 0.69 0.856996
Target:  5'- -----aACGC-CGUUUugcCGCCCGCGCa -3'
miRNA:   3'- gauuugUGCGcGCAAA---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 72373 0.69 0.849043
Target:  5'- gCUAGuguACACGCGCaaUUCGgCgGCGCa -3'
miRNA:   3'- -GAUU---UGUGCGCGcaAAGCgGgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 39810 0.69 0.832538
Target:  5'- --cAACACGCGUGcaaccaaaCG-CCGCGCCa -3'
miRNA:   3'- gauUUGUGCGCGCaaa-----GCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 100420 0.69 0.849043
Target:  5'- gUGAAUGC-CGCGacgcgCGCCCGUGCg -3'
miRNA:   3'- gAUUUGUGcGCGCaaa--GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 39952 0.7 0.788139
Target:  5'- ---uGCACGCGUGUUggcCGCCauugucagcagUGUGCCa -3'
miRNA:   3'- gauuUGUGCGCGCAAa--GCGG-----------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 77249 0.7 0.797343
Target:  5'- aCUAcuACGUGCGCGUcaagaaaugcccUUUGCCCGUGCg -3'
miRNA:   3'- -GAUu-UGUGCGCGCA------------AAGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 74909 0.7 0.815283
Target:  5'- -gAAACGUGCGCGUcacaaagggUUCGCaCCuCGCCa -3'
miRNA:   3'- gaUUUGUGCGCGCA---------AAGCG-GGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 42425 0.7 0.797343
Target:  5'- -gGGACACGUnaUGUgucCGCCgCGCGCa -3'
miRNA:   3'- gaUUUGUGCGc-GCAaa-GCGG-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 81579 0.7 0.815283
Target:  5'- uUGAACAgGUGCGUUUCGag-GCGCa -3'
miRNA:   3'- gAUUUGUgCGCGCAAAGCgggCGCGg -5'
22953 3' -54.1 NC_005137.2 + 73944 0.7 0.807291
Target:  5'- cCUGcAGCAgGC-CGUggcgaacgaggcuaCGCCCGCGCCa -3'
miRNA:   3'- -GAU-UUGUgCGcGCAaa------------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 97485 0.7 0.806394
Target:  5'- -gGAGCGCGuUGCGUcuuugagCGCaaGCGCCa -3'
miRNA:   3'- gaUUUGUGC-GCGCAaa-----GCGggCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 45610 0.7 0.797343
Target:  5'- -cAAACGCGUGCG---CGUgCUGCGCCg -3'
miRNA:   3'- gaUUUGUGCGCGCaaaGCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 67697 0.7 0.788139
Target:  5'- -----gGCGCGCGUUUgugcCGCCuCGCGgCg -3'
miRNA:   3'- gauuugUGCGCGCAAA----GCGG-GCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 112700 0.7 0.797343
Target:  5'- uUAAACGCGgGCacgUCGUCCaCGCCc -3'
miRNA:   3'- gAUUUGUGCgCGcaaAGCGGGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 43814 0.71 0.740136
Target:  5'- --cGGCACGaGCagc-CGCCCGCGCCc -3'
miRNA:   3'- gauUUGUGCgCGcaaaGCGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.