miRNA display CGI


Results 101 - 120 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 100200 0.71 0.749969
Target:  5'- gCUGAACGCGC-CG---CGCgCCGCGUCg -3'
miRNA:   3'- -GAUUUGUGCGcGCaaaGCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 76657 0.71 0.749969
Target:  5'- ---uGCACGC-CGUUgaauagaCGCCCGUGUCa -3'
miRNA:   3'- gauuUGUGCGcGCAAa------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 55575 0.71 0.730207
Target:  5'- -cGGACGCGgGCGg--CGCCgUGCGCg -3'
miRNA:   3'- gaUUUGUGCgCGCaaaGCGG-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 43814 0.71 0.740136
Target:  5'- --cGGCACGaGCagc-CGCCCGCGCCc -3'
miRNA:   3'- gauUUGUGCgCGcaaaGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 2432 0.71 0.759695
Target:  5'- ----uCACGCG-GUggccgacgUGCCCGCGCCc -3'
miRNA:   3'- gauuuGUGCGCgCAaa------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 84733 0.72 0.710095
Target:  5'- -gAAGCACGUGCccgaccCGCCCgaacGCGCCg -3'
miRNA:   3'- gaUUUGUGCGCGcaaa--GCGGG----CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 26819 0.72 0.689711
Target:  5'- ---cGCACGUGCGUgcgUCGUcguguUCGCGCUg -3'
miRNA:   3'- gauuUGUGCGCGCAa--AGCG-----GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7023 0.72 0.669129
Target:  5'- ---cGCACGCGCGUcaCgGCCuCGuCGCCg -3'
miRNA:   3'- gauuUGUGCGCGCAaaG-CGG-GC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 131095 0.72 0.669129
Target:  5'- -aAAGCGCGCGCGUcgUCGUaCC-UGCCg -3'
miRNA:   3'- gaUUUGUGCGCGCAa-AGCG-GGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 124012 0.72 0.689711
Target:  5'- aUAAAUGCGCgGCGUguaaGCCgCGCGCUc -3'
miRNA:   3'- gAUUUGUGCG-CGCAaag-CGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 44033 0.72 0.710095
Target:  5'- cCUuuGCGCGCaCgGUUUUGCCUGUGCUa -3'
miRNA:   3'- -GAuuUGUGCGcG-CAAAGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 108897 0.72 0.699932
Target:  5'- -cAAACgAUGCGCGUcgUUUGUCUGCGCg -3'
miRNA:   3'- gaUUUG-UGCGCGCA--AAGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 60763 0.72 0.699932
Target:  5'- --cGACAuuuggcccgUGCGCGUUUCGCCUuuguGCGCg -3'
miRNA:   3'- gauUUGU---------GCGCGCAAAGCGGG----CGCGg -5'
22953 3' -54.1 NC_005137.2 + 97467 0.72 0.699932
Target:  5'- gUAGugGCG-GCGUgaCGCUCGCGCa -3'
miRNA:   3'- gAUUugUGCgCGCAaaGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 59942 0.72 0.699932
Target:  5'- gCUGAGCugGCGCGccUCGUUgaUGCGCa -3'
miRNA:   3'- -GAUUUGugCGCGCaaAGCGG--GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 49846 0.73 0.658788
Target:  5'- -cAAGCG-GCGCGUaguuacCGCCgCGCGCCa -3'
miRNA:   3'- gaUUUGUgCGCGCAaa----GCGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 96181 0.73 0.658788
Target:  5'- -aAAGCACGC-UGU--UGCCCGCGUCg -3'
miRNA:   3'- gaUUUGUGCGcGCAaaGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 104685 0.73 0.617288
Target:  5'- cCUcGACGCGCGUGUUagaGUCCagcGCGCCg -3'
miRNA:   3'- -GAuUUGUGCGCGCAAag-CGGG---CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 100233 0.73 0.627666
Target:  5'- aUAAGCACGUGCG---CGCgCCGCGgCa -3'
miRNA:   3'- gAUUUGUGCGCGCaaaGCG-GGCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 31807 0.73 0.638047
Target:  5'- gCUAuGCACaGCGUGgucgCGUCCGCGCg -3'
miRNA:   3'- -GAUuUGUG-CGCGCaaa-GCGGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.