Results 121 - 130 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22953 | 3' | -54.1 | NC_005137.2 | + | 43968 | 0.74 | 0.596574 |
Target: 5'- -cGGGCGCGgGCGgc-UGCUCGUGCCg -3' miRNA: 3'- gaUUUGUGCgCGCaaaGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 122635 | 0.74 | 0.565722 |
Target: 5'- ---uGCGCGUgauGCGguugaugUCGCCCGCGCUc -3' miRNA: 3'- gauuUGUGCG---CGCaa-----AGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 97936 | 0.74 | 0.585223 |
Target: 5'- -cAAAUACGCGCGgcauuguugcaauUUUCGuUCCGCGUCa -3' miRNA: 3'- gaUUUGUGCGCGC-------------AAAGC-GGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 110639 | 0.74 | 0.565722 |
Target: 5'- -cAAACGCGCcgacgGCGUUUgGCuuGUGCCc -3' miRNA: 3'- gaUUUGUGCG-----CGCAAAgCGggCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 1838 | 0.75 | 0.495685 |
Target: 5'- aCUAAGauuGCGCGCGUUgcugaCCGCGCCg -3' miRNA: 3'- -GAUUUg--UGCGCGCAAagcg-GGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 20973 | 0.75 | 0.50547 |
Target: 5'- -----gGCGCGCGUUUUG-CCGCGCUu -3' miRNA: 3'- gauuugUGCGCGCAAAGCgGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 130850 | 0.75 | 0.545382 |
Target: 5'- -aGAACGCGUuggacGCGca--GCCCGCGCCu -3' miRNA: 3'- gaUUUGUGCG-----CGCaaagCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 97988 | 0.76 | 0.466866 |
Target: 5'- -cGGGCGCGCgGCGUgggugCGCCCGCcaagugGCCa -3' miRNA: 3'- gaUUUGUGCG-CGCAaa---GCGGGCG------CGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 63457 | 0.79 | 0.322467 |
Target: 5'- gUGAGgGCGCGCGUUgUGCCCGCGa- -3' miRNA: 3'- gAUUUgUGCGCGCAAaGCGGGCGCgg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 88936 | 1.13 | 0.002286 |
Target: 5'- gCUAAACACGCGCGUUUCGCCCGCGCCa -3' miRNA: 3'- -GAUUUGUGCGCGCAAAGCGGGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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