miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 108897 0.72 0.699932
Target:  5'- -cAAACgAUGCGCGUcgUUUGUCUGCGCg -3'
miRNA:   3'- gaUUUG-UGCGCGCA--AAGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 7023 0.72 0.669129
Target:  5'- ---cGCACGCGCGUcaCgGCCuCGuCGCCg -3'
miRNA:   3'- gauuUGUGCGCGCAaaG-CGG-GC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 59942 0.72 0.699932
Target:  5'- gCUGAGCugGCGCGccUCGUUgaUGCGCa -3'
miRNA:   3'- -GAUUUGugCGCGCaaAGCGG--GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 97467 0.72 0.699932
Target:  5'- gUAGugGCG-GCGUgaCGCUCGCGCa -3'
miRNA:   3'- gAUUugUGCgCGCAaaGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 44033 0.72 0.710095
Target:  5'- cCUuuGCGCGCaCgGUUUUGCCUGUGCUa -3'
miRNA:   3'- -GAuuUGUGCGcG-CAAAGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 100200 0.71 0.749969
Target:  5'- gCUGAACGCGC-CG---CGCgCCGCGUCg -3'
miRNA:   3'- -GAUUUGUGCGcGCaaaGCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 55575 0.71 0.730207
Target:  5'- -cGGACGCGgGCGg--CGCCgUGCGCg -3'
miRNA:   3'- gaUUUGUGCgCGCaaaGCGG-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 43814 0.71 0.740136
Target:  5'- --cGGCACGaGCagc-CGCCCGCGCCc -3'
miRNA:   3'- gauUUGUGCgCGcaaaGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 2432 0.71 0.759695
Target:  5'- ----uCACGCG-GUggccgacgUGCCCGCGCCc -3'
miRNA:   3'- gauuuGUGCGCgCAaa------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 55419 0.71 0.740136
Target:  5'- ----cCACGCGCacggcgcCGCCCGCGUCc -3'
miRNA:   3'- gauuuGUGCGCGcaaa---GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 76657 0.71 0.749969
Target:  5'- ---uGCACGC-CGUUgaauagaCGCCCGUGUCa -3'
miRNA:   3'- gauuUGUGCGcGCAAa------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 97485 0.7 0.806394
Target:  5'- -gGAGCGCGuUGCGUcuuugagCGCaaGCGCCa -3'
miRNA:   3'- gaUUUGUGC-GCGCAaa-----GCGggCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 67697 0.7 0.788139
Target:  5'- -----gGCGCGCGUUUgugcCGCCuCGCGgCg -3'
miRNA:   3'- gauuugUGCGCGCAAA----GCGG-GCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 73944 0.7 0.807291
Target:  5'- cCUGcAGCAgGC-CGUggcgaacgaggcuaCGCCCGCGCCa -3'
miRNA:   3'- -GAU-UUGUgCGcGCAaa------------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 42425 0.7 0.797343
Target:  5'- -gGGACACGUnaUGUgucCGCCgCGCGCa -3'
miRNA:   3'- gaUUUGUGCGc-GCAaa-GCGG-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 112700 0.7 0.797343
Target:  5'- uUAAACGCGgGCacgUCGUCCaCGCCc -3'
miRNA:   3'- gAUUUGUGCgCGcaaAGCGGGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 74909 0.7 0.815283
Target:  5'- -gAAACGUGCGCGUcacaaagggUUCGCaCCuCGCCa -3'
miRNA:   3'- gaUUUGUGCGCGCA---------AAGCG-GGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 39952 0.7 0.788139
Target:  5'- ---uGCACGCGUGUUggcCGCCauugucagcagUGUGCCa -3'
miRNA:   3'- gauuUGUGCGCGCAAa--GCGG-----------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 45610 0.7 0.797343
Target:  5'- -cAAACGCGUGCG---CGUgCUGCGCCg -3'
miRNA:   3'- gaUUUGUGCGCGCaaaGCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 81579 0.7 0.815283
Target:  5'- uUGAACAgGUGCGUUUCGag-GCGCa -3'
miRNA:   3'- gAUUUGUgCGCGCAAAGCgggCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.