miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 42425 0.7 0.797343
Target:  5'- -gGGACACGUnaUGUgucCGCCgCGCGCa -3'
miRNA:   3'- gaUUUGUGCGc-GCAaa-GCGG-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 13050 0.69 0.840888
Target:  5'- uUAuGCGCuCGUGUucggccaccuguUUCGCCCcGCGCCc -3'
miRNA:   3'- gAUuUGUGcGCGCA------------AAGCGGG-CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 5405 0.69 0.849043
Target:  5'- ---uGCGcCGCGCGUUUCGagCgGCGCg -3'
miRNA:   3'- gauuUGU-GCGCGCAAAGCg-GgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 99244 0.69 0.856996
Target:  5'- uUGGGCGCGCGCcccgUUGCCaCGgGCa -3'
miRNA:   3'- gAUUUGUGCGCGcaa-AGCGG-GCgCGg -5'
22953 3' -54.1 NC_005137.2 + 24194 0.69 0.824
Target:  5'- -aGAACGCGCGUcucgcuacauacGUUgacUgGCCCGUGUCa -3'
miRNA:   3'- gaUUUGUGCGCG------------CAA---AgCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 98334 0.69 0.824
Target:  5'- uUAuACuCGCGCGUaUCuuaucugugGCCgCGCGCCg -3'
miRNA:   3'- gAUuUGuGCGCGCAaAG---------CGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 95586 0.69 0.856996
Target:  5'- -----aACGC-CGUUUugcCGCCCGCGCa -3'
miRNA:   3'- gauuugUGCGcGCAAA---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 72373 0.69 0.849043
Target:  5'- gCUAGuguACACGCGCaaUUCGgCgGCGCa -3'
miRNA:   3'- -GAUU---UGUGCGCGcaAAGCgGgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 79835 0.69 0.832538
Target:  5'- -----aACGCaGCGgggUCGUCCGcCGCCg -3'
miRNA:   3'- gauuugUGCG-CGCaa-AGCGGGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 13233 0.69 0.840888
Target:  5'- aCUGGugGCaaguucggGCGCGUUUCGCaaaCGCGgUg -3'
miRNA:   3'- -GAUUugUG--------CGCGCAAAGCGg--GCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 110582 0.69 0.849043
Target:  5'- ---uGCACGCucacCGUcgCGCCCGuUGCCa -3'
miRNA:   3'- gauuUGUGCGc---GCAaaGCGGGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 39810 0.69 0.832538
Target:  5'- --cAACACGCGUGcaaccaaaCG-CCGCGCCa -3'
miRNA:   3'- gauUUGUGCGCGCaaa-----GCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 100420 0.69 0.849043
Target:  5'- gUGAAUGC-CGCGacgcgCGCCCGUGCg -3'
miRNA:   3'- gAUUUGUGcGCGCaaa--GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 130763 0.69 0.832538
Target:  5'- -----gGCGCGCGU---GUCCGCGCUu -3'
miRNA:   3'- gauuugUGCGCGCAaagCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 13056 0.68 0.879573
Target:  5'- -cGGACACGacacCGCGUUUgCGaaaCGCGCCc -3'
miRNA:   3'- gaUUUGUGC----GCGCAAA-GCgg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 64707 0.68 0.886653
Target:  5'- -------aGCGCGUgaCGUCgGCGCCg -3'
miRNA:   3'- gauuugugCGCGCAaaGCGGgCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 96417 0.68 0.893501
Target:  5'- ---uACcCGCGCGgcgacgCGCCCGcCGCg -3'
miRNA:   3'- gauuUGuGCGCGCaaa---GCGGGC-GCGg -5'
22953 3' -54.1 NC_005137.2 + 69429 0.68 0.864739
Target:  5'- cCUAAACGCGcCGCGac-CGCgCaCGCCg -3'
miRNA:   3'- -GAUUUGUGC-GCGCaaaGCGgGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 55951 0.68 0.893501
Target:  5'- cCUGAACAcCGCGCGUUg-GCuuGgCGUg -3'
miRNA:   3'- -GAUUUGU-GCGCGCAAagCGggC-GCGg -5'
22953 3' -54.1 NC_005137.2 + 63801 0.68 0.900114
Target:  5'- -cGGGCGCGaCGCGaugCGCgaCCGuCGCCg -3'
miRNA:   3'- gaUUUGUGC-GCGCaaaGCG--GGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.