Results 101 - 120 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22953 | 3' | -54.1 | NC_005137.2 | + | 101863 | 0.66 | 0.952872 |
Target: 5'- -aAAAUACGCaGCaauuGUUUUGUCUugGCGCCg -3' miRNA: 3'- gaUUUGUGCG-CG----CAAAGCGGG--CGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 42516 | 0.66 | 0.952872 |
Target: 5'- -----aGCGCGCuaaucgcUCGCCCGC-CCg -3' miRNA: 3'- gauuugUGCGCGcaa----AGCGGGCGcGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 110830 | 0.66 | 0.94869 |
Target: 5'- --cGACGCGCaaGagUCGUgCGCGCUg -3' miRNA: 3'- gauUUGUGCGcgCaaAGCGgGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 35152 | 0.66 | 0.939608 |
Target: 5'- --cGGCAUGCagGCcg-UUGCCCGuCGCCa -3' miRNA: 3'- gauUUGUGCG--CGcaaAGCGGGC-GCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 47561 | 0.66 | 0.94869 |
Target: 5'- --uGGCugGCGCGUacUUGCCaGUGCa -3' miRNA: 3'- gauUUGugCGCGCAa-AGCGGgCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 31241 | 0.66 | 0.94427 |
Target: 5'- uUGAACAUGgcCGCG--UCGUgCGCGCUc -3' miRNA: 3'- gAUUUGUGC--GCGCaaAGCGgGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 2173 | 0.66 | 0.94427 |
Target: 5'- -cGAGCGCGCGCuucaucaaGUUUaGUuuGCGCg -3' miRNA: 3'- gaUUUGUGCGCG--------CAAAgCGggCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 32799 | 0.66 | 0.939608 |
Target: 5'- -gGAACACaGCGuCGaauacgUGCCCGUGCg -3' miRNA: 3'- gaUUUGUG-CGC-GCaaa---GCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 124395 | 0.66 | 0.939608 |
Target: 5'- gCUGcGCGCGCGuCGUUUCaGCgCGCaGUUg -3' miRNA: 3'- -GAUuUGUGCGC-GCAAAG-CGgGCG-CGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 28378 | 0.66 | 0.954478 |
Target: 5'- gCUAAACACGUGCucaaCGCUCGUuucuugcgcauuaucGCCc -3' miRNA: 3'- -GAUUUGUGCGCGcaaaGCGGGCG---------------CGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 49285 | 0.66 | 0.934701 |
Target: 5'- -----gGCGCuuuGCGUUUCGaCCCGCacGCUa -3' miRNA: 3'- gauuugUGCG---CGCAAAGC-GGGCG--CGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 44281 | 0.66 | 0.954478 |
Target: 5'- -aGAGCguuGCGCGCuuucugcauggcuaaGUcuucgUCGCCCGCGUUu -3' miRNA: 3'- gaUUUG---UGCGCG---------------CAa----AGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 30014 | 0.66 | 0.939608 |
Target: 5'- uUAAGCGCG-GCGUUgagaaGCgCGCGaCCc -3' miRNA: 3'- gAUUUGUGCgCGCAAag---CGgGCGC-GG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 7345 | 0.66 | 0.939608 |
Target: 5'- --cGGCACGCGCcggUUCGaaaUGCGCUg -3' miRNA: 3'- gauUUGUGCGCGca-AAGCgg-GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 42834 | 0.66 | 0.939608 |
Target: 5'- uUAAAUACccgucgauuGCGCGcUUgGCgUCGCGCCa -3' miRNA: 3'- gAUUUGUG---------CGCGCaAAgCG-GGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 57121 | 0.66 | 0.943815 |
Target: 5'- uUAAACGCGCGUGccauuacaaaaacUUgaUCGCCgGcCGCUu -3' miRNA: 3'- gAUUUGUGCGCGC-------------AA--AGCGGgC-GCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 112864 | 0.66 | 0.939608 |
Target: 5'- aCUAu-CAUGgGCGUggacgacgUGCCCGCGUUu -3' miRNA: 3'- -GAUuuGUGCgCGCAaa------GCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 98118 | 0.66 | 0.954478 |
Target: 5'- -cGAACACaGUcCGUuugguaacuuguuuaUUCGgCCGCGCCu -3' miRNA: 3'- gaUUUGUG-CGcGCA---------------AAGCgGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 71977 | 0.66 | 0.934701 |
Target: 5'- aCUGAcguACAUGCGCGUagCGCaCgGCGaCa -3' miRNA: 3'- -GAUU---UGUGCGCGCAaaGCG-GgCGCgG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 48932 | 0.66 | 0.952872 |
Target: 5'- ---cACACGCuguGCGg--CGCCgcguccaacgauCGCGCCg -3' miRNA: 3'- gauuUGUGCG---CGCaaaGCGG------------GCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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