Results 101 - 120 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22953 | 3' | -54.1 | NC_005137.2 | + | 71977 | 0.66 | 0.934701 |
Target: 5'- aCUGAcguACAUGCGCGUagCGCaCgGCGaCa -3' miRNA: 3'- -GAUU---UGUGCGCGCAaaGCG-GgCGCgG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 49285 | 0.66 | 0.934701 |
Target: 5'- -----gGCGCuuuGCGUUUCGaCCCGCacGCUa -3' miRNA: 3'- gauuugUGCG---CGCAAAGC-GGGCG--CGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 122417 | 0.66 | 0.934701 |
Target: 5'- gCUGuuAAgACGCGgGUUUUGCUgcagCGCGCg -3' miRNA: 3'- -GAU--UUgUGCGCgCAAAGCGG----GCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 7176 | 0.66 | 0.936693 |
Target: 5'- ----uCGCGCGCGUUgcagCGCauuucgaaccggcgCGUGCCg -3' miRNA: 3'- gauuuGUGCGCGCAAa---GCGg-------------GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 32799 | 0.66 | 0.939608 |
Target: 5'- -gGAACACaGCGuCGaauacgUGCCCGUGCg -3' miRNA: 3'- gaUUUGUG-CGC-GCaaa---GCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 30014 | 0.66 | 0.939608 |
Target: 5'- uUAAGCGCG-GCGUUgagaaGCgCGCGaCCc -3' miRNA: 3'- gAUUUGUGCgCGCAAag---CGgGCGC-GG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 42834 | 0.66 | 0.939608 |
Target: 5'- uUAAAUACccgucgauuGCGCGcUUgGCgUCGCGCCa -3' miRNA: 3'- gAUUUGUG---------CGCGCaAAgCG-GGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 124395 | 0.66 | 0.939608 |
Target: 5'- gCUGcGCGCGCGuCGUUUCaGCgCGCaGUUg -3' miRNA: 3'- -GAUuUGUGCGC-GCAAAG-CGgGCG-CGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 112864 | 0.66 | 0.939608 |
Target: 5'- aCUAu-CAUGgGCGUggacgacgUGCCCGCGUUu -3' miRNA: 3'- -GAUuuGUGCgCGCAaa------GCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 35152 | 0.66 | 0.939608 |
Target: 5'- --cGGCAUGCagGCcg-UUGCCCGuCGCCa -3' miRNA: 3'- gauUUGUGCG--CGcaaAGCGGGC-GCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 7345 | 0.66 | 0.939608 |
Target: 5'- --cGGCACGCGCcggUUCGaaaUGCGCUg -3' miRNA: 3'- gauUUGUGCGCGca-AAGCgg-GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 24092 | 0.66 | 0.942434 |
Target: 5'- ---uGCGCuGCGCGUUUUGCaaaguggaaauaaUGCGCUg -3' miRNA: 3'- gauuUGUG-CGCGCAAAGCGg------------GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 57121 | 0.66 | 0.943815 |
Target: 5'- uUAAACGCGCGUGccauuacaaaaacUUgaUCGCCgGcCGCUu -3' miRNA: 3'- gAUUUGUGCGCGC-------------AA--AGCGGgC-GCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 95651 | 0.66 | 0.94427 |
Target: 5'- ----cCACGUcaGCGaugCGCCCGUGCg -3' miRNA: 3'- gauuuGUGCG--CGCaaaGCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 36195 | 0.66 | 0.94427 |
Target: 5'- --cAACAa-CGCuUUUaaCGCCCGCGCCc -3' miRNA: 3'- gauUUGUgcGCGcAAA--GCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 28369 | 0.66 | 0.94427 |
Target: 5'- -aAAACugGCGCGaggaCGaCUGCGUCg -3' miRNA: 3'- gaUUUGugCGCGCaaa-GCgGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 2173 | 0.66 | 0.94427 |
Target: 5'- -cGAGCGCGCGCuucaucaaGUUUaGUuuGCGCg -3' miRNA: 3'- gaUUUGUGCGCG--------CAAAgCGggCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 31241 | 0.66 | 0.94427 |
Target: 5'- uUGAACAUGgcCGCG--UCGUgCGCGCUc -3' miRNA: 3'- gAUUUGUGC--GCGCaaAGCGgGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 61557 | 0.66 | 0.948259 |
Target: 5'- -aGAACGCG-GCGUUucuuacgUCGgCCGCcaacGCCa -3' miRNA: 3'- gaUUUGUGCgCGCAA-------AGCgGGCG----CGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 47561 | 0.66 | 0.94869 |
Target: 5'- --uGGCugGCGCGUacUUGCCaGUGCa -3' miRNA: 3'- gauUUGugCGCGCAa-AGCGGgCGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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