miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 96003 0.68 0.893501
Target:  5'- uUAAACACGgGCaacaauccgUCGCCCGCuggGCa -3'
miRNA:   3'- gAUUUGUGCgCGcaa------AGCGGGCG---CGg -5'
22953 3' -54.1 NC_005137.2 + 119841 0.68 0.893501
Target:  5'- gCUAAGC-UGUGUGcg-CGCgCCGUGCCu -3'
miRNA:   3'- -GAUUUGuGCGCGCaaaGCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 96417 0.68 0.893501
Target:  5'- ---uACcCGCGCGgcgacgCGCCCGcCGCg -3'
miRNA:   3'- gauuUGuGCGCGCaaa---GCGGGC-GCGg -5'
22953 3' -54.1 NC_005137.2 + 49256 0.68 0.886653
Target:  5'- aUGAACAaauuuaGCGUaGUUUUGUuuGCGCUg -3'
miRNA:   3'- gAUUUGUg-----CGCG-CAAAGCGggCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 46268 0.68 0.886653
Target:  5'- -gGGugACGCGUGguccaCGCUCGUGCg -3'
miRNA:   3'- gaUUugUGCGCGCaaa--GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 113039 0.68 0.886653
Target:  5'- -cGggUACGCGCa----GCCCGCGUg -3'
miRNA:   3'- gaUuuGUGCGCGcaaagCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 64707 0.68 0.886653
Target:  5'- -------aGCGCGUgaCGUCgGCGCCg -3'
miRNA:   3'- gauuugugCGCGCAaaGCGGgCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 38803 0.68 0.879573
Target:  5'- --cAACGCGCGCc---UGCCCaGCGUCg -3'
miRNA:   3'- gauUUGUGCGCGcaaaGCGGG-CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 10945 0.68 0.879573
Target:  5'- gCUAAGCACGaCGaCGaaggCGCCacgGUGCCa -3'
miRNA:   3'- -GAUUUGUGC-GC-GCaaa-GCGGg--CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 98149 0.68 0.879573
Target:  5'- aCUuGGCGgGCGCacccaCGCCgCGCGCCc -3'
miRNA:   3'- -GAuUUGUgCGCGcaaa-GCGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 13056 0.68 0.879573
Target:  5'- -cGGACACGacacCGCGUUUgCGaaaCGCGCCc -3'
miRNA:   3'- gaUUUGUGC----GCGCAAA-GCgg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 63651 0.68 0.879573
Target:  5'- ----uCGCGCaucGCGUcgCGCCCGCGgUCa -3'
miRNA:   3'- gauuuGUGCG---CGCAaaGCGGGCGC-GG- -5'
22953 3' -54.1 NC_005137.2 + 1663 0.68 0.872267
Target:  5'- uUGAACaACGCGuCGg--CGCCgCGCGgCg -3'
miRNA:   3'- gAUUUG-UGCGC-GCaaaGCGG-GCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 69429 0.68 0.864739
Target:  5'- cCUAAACGCGcCGCGac-CGCgCaCGCCg -3'
miRNA:   3'- -GAUUUGUGC-GCGCaaaGCGgGcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 46680 0.68 0.864739
Target:  5'- -aAAGCACGCGCcaGUaugcUCGCaCGCGCg -3'
miRNA:   3'- gaUUUGUGCGCG--CAa---AGCGgGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 50083 0.68 0.864739
Target:  5'- --uGACGCGCGCcuccaCGgCCGCGCa -3'
miRNA:   3'- gauUUGUGCGCGcaaa-GCgGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 99244 0.69 0.856996
Target:  5'- uUGGGCGCGCGCcccgUUGCCaCGgGCa -3'
miRNA:   3'- gAUUUGUGCGCGcaa-AGCGG-GCgCGg -5'
22953 3' -54.1 NC_005137.2 + 95586 0.69 0.856996
Target:  5'- -----aACGC-CGUUUugcCGCCCGCGCa -3'
miRNA:   3'- gauuugUGCGcGCAAA---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 100420 0.69 0.849043
Target:  5'- gUGAAUGC-CGCGacgcgCGCCCGUGCg -3'
miRNA:   3'- gAUUUGUGcGCGCaaa--GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 72373 0.69 0.849043
Target:  5'- gCUAGuguACACGCGCaaUUCGgCgGCGCa -3'
miRNA:   3'- -GAUU---UGUGCGCGcaAAGCgGgCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.