miRNA display CGI


Results 41 - 60 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 44033 0.72 0.710095
Target:  5'- cCUuuGCGCGCaCgGUUUUGCCUGUGCUa -3'
miRNA:   3'- -GAuuUGUGCGcG-CAAAGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 44281 0.66 0.954478
Target:  5'- -aGAGCguuGCGCGCuuucugcauggcuaaGUcuucgUCGCCCGCGUUu -3'
miRNA:   3'- gaUUUG---UGCGCG---------------CAa----AGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 45262 0.67 0.906488
Target:  5'- --cGACGCGuCGCG---CGCCCGCGa- -3'
miRNA:   3'- gauUUGUGC-GCGCaaaGCGGGCGCgg -5'
22953 3' -54.1 NC_005137.2 + 45610 0.7 0.797343
Target:  5'- -cAAACGCGUGCG---CGUgCUGCGCCg -3'
miRNA:   3'- gaUUUGUGCGCGCaaaGCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 45836 0.66 0.94869
Target:  5'- -aGAGCAUcCGCGUUggCGCCgC-CGCCc -3'
miRNA:   3'- gaUUUGUGcGCGCAAa-GCGG-GcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 46268 0.68 0.886653
Target:  5'- -gGGugACGCGUGguccaCGCUCGUGCg -3'
miRNA:   3'- gaUUugUGCGCGCaaa--GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 46680 0.68 0.864739
Target:  5'- -aAAGCACGCGCcaGUaugcUCGCaCGCGCg -3'
miRNA:   3'- gaUUUGUGCGCG--CAa---AGCGgGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 46825 0.67 0.920796
Target:  5'- ---uACugGCGCGUgcuUUCgauuaaagcggcgcuGCCCuuaGCGCCg -3'
miRNA:   3'- gauuUGugCGCGCA---AAG---------------CGGG---CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 47561 0.66 0.94869
Target:  5'- --uGGCugGCGCGUacUUGCCaGUGCa -3'
miRNA:   3'- gauUUGugCGCGCAa-AGCGGgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 48932 0.66 0.952872
Target:  5'- ---cACACGCuguGCGg--CGCCgcguccaacgauCGCGCCg -3'
miRNA:   3'- gauuUGUGCG---CGCaaaGCGG------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 49256 0.68 0.886653
Target:  5'- aUGAACAaauuuaGCGUaGUUUUGUuuGCGCUg -3'
miRNA:   3'- gAUUUGUg-----CGCG-CAAAGCGggCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 49285 0.66 0.934701
Target:  5'- -----gGCGCuuuGCGUUUCGaCCCGCacGCUa -3'
miRNA:   3'- gauuugUGCG---CGCAAAGC-GGGCG--CGG- -5'
22953 3' -54.1 NC_005137.2 + 49684 0.67 0.912621
Target:  5'- -cAAugGCGCGCGg--CGguaacuaCGCGCCg -3'
miRNA:   3'- gaUUugUGCGCGCaaaGCgg-----GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 49846 0.73 0.658788
Target:  5'- -cAAGCG-GCGCGUaguuacCGCCgCGCGCCa -3'
miRNA:   3'- gaUUUGUgCGCGCAaa----GCGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 50083 0.68 0.864739
Target:  5'- --uGACGCGCGCcuccaCGgCCGCGCa -3'
miRNA:   3'- gauUUGUGCGCGcaaa-GCgGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 55419 0.71 0.740136
Target:  5'- ----cCACGCGCacggcgcCGCCCGCGUCc -3'
miRNA:   3'- gauuuGUGCGCGcaaa---GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 55575 0.71 0.730207
Target:  5'- -cGGACGCGgGCGg--CGCCgUGCGCg -3'
miRNA:   3'- gaUUUGUGCgCGCaaaGCGG-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 55951 0.68 0.893501
Target:  5'- cCUGAACAcCGCGCGUUg-GCuuGgCGUg -3'
miRNA:   3'- -GAUUUGU-GCGCGCAAagCGggC-GCGg -5'
22953 3' -54.1 NC_005137.2 + 57121 0.66 0.943815
Target:  5'- uUAAACGCGCGUGccauuacaaaaacUUgaUCGCCgGcCGCUu -3'
miRNA:   3'- gAUUUGUGCGCGC-------------AA--AGCGGgC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 59942 0.72 0.699932
Target:  5'- gCUGAGCugGCGCGccUCGUUgaUGCGCa -3'
miRNA:   3'- -GAUUUGugCGCGCaaAGCGG--GCGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.