Results 81 - 100 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22953 | 3' | -54.1 | NC_005137.2 | + | 79835 | 0.69 | 0.832538 |
Target: 5'- -----aACGCaGCGgggUCGUCCGcCGCCg -3' miRNA: 3'- gauuugUGCG-CGCaa-AGCGGGC-GCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 81579 | 0.7 | 0.815283 |
Target: 5'- uUGAACAgGUGCGUUUCGag-GCGCa -3' miRNA: 3'- gAUUUGUgCGCGCAAAGCgggCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 84733 | 0.72 | 0.710095 |
Target: 5'- -gAAGCACGUGCccgaccCGCCCgaacGCGCCg -3' miRNA: 3'- gaUUUGUGCGCGcaaa--GCGGG----CGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 87475 | 0.67 | 0.918509 |
Target: 5'- --cAGCuGCGC-CGUUUCGCgaCGCGCUu -3' miRNA: 3'- gauUUG-UGCGcGCAAAGCGg-GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 88469 | 0.68 | 0.900114 |
Target: 5'- -gAGACugGCGCGgUUCaCCguCGCGCa -3' miRNA: 3'- gaUUUGugCGCGCaAAGcGG--GCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 88928 | 0.66 | 0.952872 |
Target: 5'- gUGGACAUGCGCGa---GCaCGCGUUg -3' miRNA: 3'- gAUUUGUGCGCGCaaagCGgGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 88936 | 1.13 | 0.002286 |
Target: 5'- gCUAAACACGCGCGUUUCGCCCGCGCCa -3' miRNA: 3'- -GAUUUGUGCGCGCAAAGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 89099 | 0.66 | 0.952872 |
Target: 5'- -gAGAUugGCGCGgg-CGaaaCGCGCg -3' miRNA: 3'- gaUUUGugCGCGCaaaGCgg-GCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 91583 | 0.67 | 0.918509 |
Target: 5'- uCUGggUGCGCGa----CGCCUGCGCg -3' miRNA: 3'- -GAUuuGUGCGCgcaaaGCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 93465 | 0.68 | 0.900114 |
Target: 5'- -cGGGCACgGUGCG---CGCCaGCGCCg -3' miRNA: 3'- gaUUUGUG-CGCGCaaaGCGGgCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 93691 | 0.67 | 0.924153 |
Target: 5'- uUGGACACGaCGCaGUUUUcgGCCgacgcgugcauuUGCGCCg -3' miRNA: 3'- gAUUUGUGC-GCG-CAAAG--CGG------------GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 95586 | 0.69 | 0.856996 |
Target: 5'- -----aACGC-CGUUUugcCGCCCGCGCa -3' miRNA: 3'- gauuugUGCGcGCAAA---GCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 95651 | 0.66 | 0.94427 |
Target: 5'- ----cCACGUcaGCGaugCGCCCGUGCg -3' miRNA: 3'- gauuuGUGCG--CGCaaaGCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 96003 | 0.68 | 0.893501 |
Target: 5'- uUAAACACGgGCaacaauccgUCGCCCGCuggGCa -3' miRNA: 3'- gAUUUGUGCgCGcaa------AGCGGGCG---CGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 96181 | 0.73 | 0.658788 |
Target: 5'- -aAAGCACGC-UGU--UGCCCGCGUCg -3' miRNA: 3'- gaUUUGUGCGcGCAaaGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 96292 | 0.67 | 0.918509 |
Target: 5'- -cGGACGCGUGCa-UUCGCCgacacgccggCGCGCa -3' miRNA: 3'- gaUUUGUGCGCGcaAAGCGG----------GCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 96417 | 0.68 | 0.893501 |
Target: 5'- ---uACcCGCGCGgcgacgCGCCCGcCGCg -3' miRNA: 3'- gauuUGuGCGCGCaaa---GCGGGC-GCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 97467 | 0.72 | 0.699932 |
Target: 5'- gUAGugGCG-GCGUgaCGCUCGCGCa -3' miRNA: 3'- gAUUugUGCgCGCAaaGCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 97485 | 0.7 | 0.806394 |
Target: 5'- -gGAGCGCGuUGCGUcuuugagCGCaaGCGCCa -3' miRNA: 3'- gaUUUGUGC-GCGCAaa-----GCGggCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 97936 | 0.74 | 0.585223 |
Target: 5'- -cAAAUACGCGCGgcauuguugcaauUUUCGuUCCGCGUCa -3' miRNA: 3'- gaUUUGUGCGCGC-------------AAAGC-GGGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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