miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 101863 0.66 0.952872
Target:  5'- -aAAAUACGCaGCaauuGUUUUGUCUugGCGCCg -3'
miRNA:   3'- gaUUUGUGCG-CG----CAAAGCGGG--CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 100420 0.69 0.849043
Target:  5'- gUGAAUGC-CGCGacgcgCGCCCGUGCg -3'
miRNA:   3'- gAUUUGUGcGCGCaaa--GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 100233 0.73 0.627666
Target:  5'- aUAAGCACGUGCG---CGCgCCGCGgCa -3'
miRNA:   3'- gAUUUGUGCGCGCaaaGCG-GGCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 100200 0.71 0.749969
Target:  5'- gCUGAACGCGC-CG---CGCgCCGCGUCg -3'
miRNA:   3'- -GAUUUGUGCGcGCaaaGCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 99244 0.69 0.856996
Target:  5'- uUGGGCGCGCGCcccgUUGCCaCGgGCa -3'
miRNA:   3'- gAUUUGUGCGCGcaa-AGCGG-GCgCGg -5'
22953 3' -54.1 NC_005137.2 + 98334 0.69 0.824
Target:  5'- uUAuACuCGCGCGUaUCuuaucugugGCCgCGCGCCg -3'
miRNA:   3'- gAUuUGuGCGCGCAaAG---------CGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 98186 0.68 0.900114
Target:  5'- -aAGAUACGCGCGaguauaaaggUUGCCUgGCGCg -3'
miRNA:   3'- gaUUUGUGCGCGCaa--------AGCGGG-CGCGg -5'
22953 3' -54.1 NC_005137.2 + 98149 0.68 0.879573
Target:  5'- aCUuGGCGgGCGCacccaCGCCgCGCGCCc -3'
miRNA:   3'- -GAuUUGUgCGCGcaaa-GCGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 98118 0.66 0.954478
Target:  5'- -cGAACACaGUcCGUuugguaacuuguuuaUUCGgCCGCGCCu -3'
miRNA:   3'- gaUUUGUG-CGcGCA---------------AAGCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 97988 0.76 0.466866
Target:  5'- -cGGGCGCGCgGCGUgggugCGCCCGCcaagugGCCa -3'
miRNA:   3'- gaUUUGUGCG-CGCAaa---GCGGGCG------CGG- -5'
22953 3' -54.1 NC_005137.2 + 97936 0.74 0.585223
Target:  5'- -cAAAUACGCGCGgcauuguugcaauUUUCGuUCCGCGUCa -3'
miRNA:   3'- gaUUUGUGCGCGC-------------AAAGC-GGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 97485 0.7 0.806394
Target:  5'- -gGAGCGCGuUGCGUcuuugagCGCaaGCGCCa -3'
miRNA:   3'- gaUUUGUGC-GCGCAaa-----GCGggCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 97467 0.72 0.699932
Target:  5'- gUAGugGCG-GCGUgaCGCUCGCGCa -3'
miRNA:   3'- gAUUugUGCgCGCAaaGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 96417 0.68 0.893501
Target:  5'- ---uACcCGCGCGgcgacgCGCCCGcCGCg -3'
miRNA:   3'- gauuUGuGCGCGCaaa---GCGGGC-GCGg -5'
22953 3' -54.1 NC_005137.2 + 96292 0.67 0.918509
Target:  5'- -cGGACGCGUGCa-UUCGCCgacacgccggCGCGCa -3'
miRNA:   3'- gaUUUGUGCGCGcaAAGCGG----------GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 96181 0.73 0.658788
Target:  5'- -aAAGCACGC-UGU--UGCCCGCGUCg -3'
miRNA:   3'- gaUUUGUGCGcGCAaaGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 96003 0.68 0.893501
Target:  5'- uUAAACACGgGCaacaauccgUCGCCCGCuggGCa -3'
miRNA:   3'- gAUUUGUGCgCGcaa------AGCGGGCG---CGg -5'
22953 3' -54.1 NC_005137.2 + 95651 0.66 0.94427
Target:  5'- ----cCACGUcaGCGaugCGCCCGUGCg -3'
miRNA:   3'- gauuuGUGCG--CGCaaaGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 95586 0.69 0.856996
Target:  5'- -----aACGC-CGUUUugcCGCCCGCGCa -3'
miRNA:   3'- gauuugUGCGcGCAAA---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 93691 0.67 0.924153
Target:  5'- uUGGACACGaCGCaGUUUUcgGCCgacgcgugcauuUGCGCCg -3'
miRNA:   3'- gAUUUGUGC-GCG-CAAAG--CGG------------GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.