Results 81 - 100 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22953 | 3' | -54.1 | NC_005137.2 | + | 48932 | 0.66 | 0.952872 |
Target: 5'- ---cACACGCuguGCGg--CGCCgcguccaacgauCGCGCCg -3' miRNA: 3'- gauuUGUGCG---CGCaaaGCGG------------GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 47561 | 0.66 | 0.94869 |
Target: 5'- --uGGCugGCGCGUacUUGCCaGUGCa -3' miRNA: 3'- gauUUGugCGCGCAa-AGCGGgCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 46825 | 0.67 | 0.920796 |
Target: 5'- ---uACugGCGCGUgcuUUCgauuaaagcggcgcuGCCCuuaGCGCCg -3' miRNA: 3'- gauuUGugCGCGCA---AAG---------------CGGG---CGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 46680 | 0.68 | 0.864739 |
Target: 5'- -aAAGCACGCGCcaGUaugcUCGCaCGCGCg -3' miRNA: 3'- gaUUUGUGCGCG--CAa---AGCGgGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 46268 | 0.68 | 0.886653 |
Target: 5'- -gGGugACGCGUGguccaCGCUCGUGCg -3' miRNA: 3'- gaUUugUGCGCGCaaa--GCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 45836 | 0.66 | 0.94869 |
Target: 5'- -aGAGCAUcCGCGUUggCGCCgC-CGCCc -3' miRNA: 3'- gaUUUGUGcGCGCAAa-GCGG-GcGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 45610 | 0.7 | 0.797343 |
Target: 5'- -cAAACGCGUGCG---CGUgCUGCGCCg -3' miRNA: 3'- gaUUUGUGCGCGCaaaGCG-GGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 45262 | 0.67 | 0.906488 |
Target: 5'- --cGACGCGuCGCG---CGCCCGCGa- -3' miRNA: 3'- gauUUGUGC-GCGCaaaGCGGGCGCgg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 44281 | 0.66 | 0.954478 |
Target: 5'- -aGAGCguuGCGCGCuuucugcauggcuaaGUcuucgUCGCCCGCGUUu -3' miRNA: 3'- gaUUUG---UGCGCG---------------CAa----AGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 44033 | 0.72 | 0.710095 |
Target: 5'- cCUuuGCGCGCaCgGUUUUGCCUGUGCUa -3' miRNA: 3'- -GAuuUGUGCGcG-CAAAGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 43968 | 0.74 | 0.596574 |
Target: 5'- -cGGGCGCGgGCGgc-UGCUCGUGCCg -3' miRNA: 3'- gaUUUGUGCgCGCaaaGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 43814 | 0.71 | 0.740136 |
Target: 5'- --cGGCACGaGCagc-CGCCCGCGCCc -3' miRNA: 3'- gauUUGUGCgCGcaaaGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 42834 | 0.66 | 0.939608 |
Target: 5'- uUAAAUACccgucgauuGCGCGcUUgGCgUCGCGCCa -3' miRNA: 3'- gAUUUGUG---------CGCGCaAAgCG-GGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 42516 | 0.66 | 0.952872 |
Target: 5'- -----aGCGCGCuaaucgcUCGCCCGC-CCg -3' miRNA: 3'- gauuugUGCGCGcaa----AGCGGGCGcGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 42425 | 0.7 | 0.797343 |
Target: 5'- -gGGACACGUnaUGUgucCGCCgCGCGCa -3' miRNA: 3'- gaUUUGUGCGc-GCAaa-GCGG-GCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 39952 | 0.7 | 0.788139 |
Target: 5'- ---uGCACGCGUGUUggcCGCCauugucagcagUGUGCCa -3' miRNA: 3'- gauuUGUGCGCGCAAa--GCGG-----------GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 39810 | 0.69 | 0.832538 |
Target: 5'- --cAACACGCGUGcaaccaaaCG-CCGCGCCa -3' miRNA: 3'- gauUUGUGCGCGCaaa-----GCgGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 38803 | 0.68 | 0.879573 |
Target: 5'- --cAACGCGCGCc---UGCCCaGCGUCg -3' miRNA: 3'- gauUUGUGCGCGcaaaGCGGG-CGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 36195 | 0.66 | 0.94427 |
Target: 5'- --cAACAa-CGCuUUUaaCGCCCGCGCCc -3' miRNA: 3'- gauUUGUgcGCGcAAA--GCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 35564 | 0.67 | 0.906488 |
Target: 5'- -aAGACACGCac----CGCCgGCGCCa -3' miRNA: 3'- gaUUUGUGCGcgcaaaGCGGgCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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