miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 72373 0.69 0.849043
Target:  5'- gCUAGuguACACGCGCaaUUCGgCgGCGCa -3'
miRNA:   3'- -GAUU---UGUGCGCGcaAAGCgGgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 95586 0.69 0.856996
Target:  5'- -----aACGC-CGUUUugcCGCCCGCGCa -3'
miRNA:   3'- gauuugUGCGcGCAAA---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 42834 0.66 0.939608
Target:  5'- uUAAAUACccgucgauuGCGCGcUUgGCgUCGCGCCa -3'
miRNA:   3'- gAUUUGUG---------CGCGCaAAgCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7345 0.66 0.939608
Target:  5'- --cGGCACGCGCcggUUCGaaaUGCGCUg -3'
miRNA:   3'- gauUUGUGCGCGca-AAGCgg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 30014 0.66 0.939608
Target:  5'- uUAAGCGCG-GCGUUgagaaGCgCGCGaCCc -3'
miRNA:   3'- gAUUUGUGCgCGCAAag---CGgGCGC-GG- -5'
22953 3' -54.1 NC_005137.2 + 35152 0.66 0.939608
Target:  5'- --cGGCAUGCagGCcg-UUGCCCGuCGCCa -3'
miRNA:   3'- gauUUGUGCG--CGcaaAGCGGGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 112864 0.66 0.939608
Target:  5'- aCUAu-CAUGgGCGUggacgacgUGCCCGCGUUu -3'
miRNA:   3'- -GAUuuGUGCgCGCAaa------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 72508 0.67 0.92955
Target:  5'- aCUAGcguGCACGCggaGCGgcgcaGCUCGCGCa -3'
miRNA:   3'- -GAUU---UGUGCG---CGCaaag-CGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 108131 0.67 0.92955
Target:  5'- ---uGCGCGCGCGUcaaCGCgaccgaUCGCGCa -3'
miRNA:   3'- gauuUGUGCGCGCAaa-GCG------GGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 78404 0.67 0.924153
Target:  5'- aUAGACACGgGCaaucgGUUUUGCUaucaugCGCGUCa -3'
miRNA:   3'- gAUUUGUGCgCG-----CAAAGCGG------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 57121 0.66 0.943815
Target:  5'- uUAAACGCGCGUGccauuacaaaaacUUgaUCGCCgGcCGCUu -3'
miRNA:   3'- gAUUUGUGCGCGC-------------AA--AGCGGgC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 24092 0.66 0.942434
Target:  5'- ---uGCGCuGCGCGUUUUGCaaaguggaaauaaUGCGCUg -3'
miRNA:   3'- gauuUGUG-CGCGCAAAGCGg------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 63457 0.79 0.322467
Target:  5'- gUGAGgGCGCGCGUUgUGCCCGCGa- -3'
miRNA:   3'- gAUUUgUGCGCGCAAaGCGGGCGCgg -5'
22953 3' -54.1 NC_005137.2 + 88928 0.66 0.952872
Target:  5'- gUGGACAUGCGCGa---GCaCGCGUUg -3'
miRNA:   3'- gAUUUGUGCGCGCaaagCGgGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 89099 0.66 0.952872
Target:  5'- -gAGAUugGCGCGgg-CGaaaCGCGCg -3'
miRNA:   3'- gaUUUGugCGCGCaaaGCgg-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 45836 0.66 0.94869
Target:  5'- -aGAGCAUcCGCGUUggCGCCgC-CGCCc -3'
miRNA:   3'- gaUUUGUGcGCGCAAa-GCGG-GcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 61557 0.66 0.948259
Target:  5'- -aGAACGCG-GCGUUucuuacgUCGgCCGCcaacGCCa -3'
miRNA:   3'- gaUUUGUGCgCGCAA-------AGCgGGCG----CGG- -5'
22953 3' -54.1 NC_005137.2 + 28369 0.66 0.94427
Target:  5'- -aAAACugGCGCGaggaCGaCUGCGUCg -3'
miRNA:   3'- gaUUUGugCGCGCaaa-GCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 36195 0.66 0.94427
Target:  5'- --cAACAa-CGCuUUUaaCGCCCGCGCCc -3'
miRNA:   3'- gauUUGUgcGCGcAAA--GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 95651 0.66 0.94427
Target:  5'- ----cCACGUcaGCGaugCGCCCGUGCg -3'
miRNA:   3'- gauuuGUGCG--CGCaaaGCGGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.