miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 63633 0.67 0.918509
Target:  5'- -cGAGCACGUccgGUGUuggUUUGUCCGCGUUu -3'
miRNA:   3'- gaUUUGUGCG---CGCA---AAGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 32042 0.67 0.924153
Target:  5'- -----gGCGUGCGggUCGUCUGUGUa -3'
miRNA:   3'- gauuugUGCGCGCaaAGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 42834 0.66 0.939608
Target:  5'- uUAAAUACccgucgauuGCGCGcUUgGCgUCGCGCCa -3'
miRNA:   3'- gAUUUGUG---------CGCGCaAAgCG-GGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 45836 0.66 0.94869
Target:  5'- -aGAGCAUcCGCGUUggCGCCgC-CGCCc -3'
miRNA:   3'- gaUUUGUGcGCGCAAa-GCGG-GcGCGG- -5'
22953 3' -54.1 NC_005137.2 + 38803 0.68 0.879573
Target:  5'- --cAACGCGCGCc---UGCCCaGCGUCg -3'
miRNA:   3'- gauUUGUGCGCGcaaaGCGGG-CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7168 0.68 0.900114
Target:  5'- --cGugACGCGCGUg-CGCCacguuGUGCCc -3'
miRNA:   3'- gauUugUGCGCGCAaaGCGGg----CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 78404 0.67 0.924153
Target:  5'- aUAGACACGgGCaaucgGUUUUGCUaucaugCGCGUCa -3'
miRNA:   3'- gAUUUGUGCgCG-----CAAAGCGG------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 89099 0.66 0.952872
Target:  5'- -gAGAUugGCGCGgg-CGaaaCGCGCg -3'
miRNA:   3'- gaUUUGugCGCGCaaaGCgg-GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 63801 0.68 0.900114
Target:  5'- -cGGGCGCGaCGCGaugCGCgaCCGuCGCCg -3'
miRNA:   3'- gaUUUGUGC-GCGCaaaGCG--GGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 88928 0.66 0.952872
Target:  5'- gUGGACAUGCGCGa---GCaCGCGUUg -3'
miRNA:   3'- gAUUUGUGCGCGCaaagCGgGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 93691 0.67 0.924153
Target:  5'- uUGGACACGaCGCaGUUUUcgGCCgacgcgugcauuUGCGCCg -3'
miRNA:   3'- gAUUUGUGC-GCG-CAAAG--CGG------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 87475 0.67 0.918509
Target:  5'- --cAGCuGCGC-CGUUUCGCgaCGCGCUu -3'
miRNA:   3'- gauUUG-UGCGcGCAAAGCGg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 112864 0.66 0.939608
Target:  5'- aCUAu-CAUGgGCGUggacgacgUGCCCGCGUUu -3'
miRNA:   3'- -GAUuuGUGCgCGCAaa------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7345 0.66 0.939608
Target:  5'- --cGGCACGCGCcggUUCGaaaUGCGCUg -3'
miRNA:   3'- gauUUGUGCGCGca-AAGCgg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 95651 0.66 0.94427
Target:  5'- ----cCACGUcaGCGaugCGCCCGUGCg -3'
miRNA:   3'- gauuuGUGCG--CGCaaaGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 61557 0.66 0.948259
Target:  5'- -aGAACGCG-GCGUUucuuacgUCGgCCGCcaacGCCa -3'
miRNA:   3'- gaUUUGUGCgCGCAA-------AGCgGGCG----CGG- -5'
22953 3' -54.1 NC_005137.2 + 100420 0.69 0.849043
Target:  5'- gUGAAUGC-CGCGacgcgCGCCCGUGCg -3'
miRNA:   3'- gAUUUGUGcGCGCaaa--GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 98149 0.68 0.879573
Target:  5'- aCUuGGCGgGCGCacccaCGCCgCGCGCCc -3'
miRNA:   3'- -GAuUUGUgCGCGcaaa-GCGG-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 113039 0.68 0.886653
Target:  5'- -cGggUACGCGCa----GCCCGCGUg -3'
miRNA:   3'- gaUuuGUGCGCGcaaagCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 96003 0.68 0.893501
Target:  5'- uUAAACACGgGCaacaauccgUCGCCCGCuggGCa -3'
miRNA:   3'- gAUUUGUGCgCGcaa------AGCGGGCG---CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.