miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 73944 0.7 0.807291
Target:  5'- cCUGcAGCAgGC-CGUggcgaacgaggcuaCGCCCGCGCCa -3'
miRNA:   3'- -GAU-UUGUgCGcGCAaa------------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 45262 0.67 0.906488
Target:  5'- --cGACGCGuCGCG---CGCCCGCGa- -3'
miRNA:   3'- gauUUGUGC-GCGCaaaGCGGGCGCgg -5'
22953 3' -54.1 NC_005137.2 + 24194 0.69 0.824
Target:  5'- -aGAACGCGCGUcucgcuacauacGUUgacUgGCCCGUGUCa -3'
miRNA:   3'- gaUUUGUGCGCG------------CAA---AgCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 13050 0.69 0.840888
Target:  5'- uUAuGCGCuCGUGUucggccaccuguUUCGCCCcGCGCCc -3'
miRNA:   3'- gAUuUGUGcGCGCA------------AAGCGGG-CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 7168 0.68 0.900114
Target:  5'- --cGugACGCGCGUg-CGCCacguuGUGCCc -3'
miRNA:   3'- gauUugUGCGCGCAaaGCGGg----CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 96003 0.68 0.893501
Target:  5'- uUAAACACGgGCaacaauccgUCGCCCGCuggGCa -3'
miRNA:   3'- gAUUUGUGCgCGcaa------AGCGGGCG---CGg -5'
22953 3' -54.1 NC_005137.2 + 113039 0.68 0.886653
Target:  5'- -cGggUACGCGCa----GCCCGCGUg -3'
miRNA:   3'- gaUuuGUGCGCGcaaagCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 100233 0.73 0.627666
Target:  5'- aUAAGCACGUGCG---CGCgCCGCGgCa -3'
miRNA:   3'- gAUUUGUGCGCGCaaaGCG-GGCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 96417 0.68 0.893501
Target:  5'- ---uACcCGCGCGgcgacgCGCCCGcCGCg -3'
miRNA:   3'- gauuUGuGCGCGCaaa---GCGGGC-GCGg -5'
22953 3' -54.1 NC_005137.2 + 64707 0.68 0.886653
Target:  5'- -------aGCGCGUgaCGUCgGCGCCg -3'
miRNA:   3'- gauuugugCGCGCAaaGCGGgCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 13056 0.68 0.879573
Target:  5'- -cGGACACGacacCGCGUUUgCGaaaCGCGCCc -3'
miRNA:   3'- gaUUUGUGC----GCGCAAA-GCgg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 47561 0.66 0.94869
Target:  5'- --uGGCugGCGCGUacUUGCCaGUGCa -3'
miRNA:   3'- gauUUGugCGCGCAa-AGCGGgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 110830 0.66 0.94869
Target:  5'- --cGACGCGCaaGagUCGUgCGCGCUg -3'
miRNA:   3'- gauUUGUGCGcgCaaAGCGgGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 42516 0.66 0.952872
Target:  5'- -----aGCGCGCuaaucgcUCGCCCGC-CCg -3'
miRNA:   3'- gauuugUGCGCGcaa----AGCGGGCGcGG- -5'
22953 3' -54.1 NC_005137.2 + 101863 0.66 0.952872
Target:  5'- -aAAAUACGCaGCaauuGUUUUGUCUugGCGCCg -3'
miRNA:   3'- gaUUUGUGCG-CG----CAAAGCGGG--CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 44281 0.66 0.954478
Target:  5'- -aGAGCguuGCGCGCuuucugcauggcuaaGUcuucgUCGCCCGCGUUu -3'
miRNA:   3'- gaUUUG---UGCGCG---------------CAa----AGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 55951 0.68 0.893501
Target:  5'- cCUGAACAcCGCGCGUUg-GCuuGgCGUg -3'
miRNA:   3'- -GAUUUGU-GCGCGCAAagCGggC-GCGg -5'
22953 3' -54.1 NC_005137.2 + 28378 0.66 0.954478
Target:  5'- gCUAAACACGUGCucaaCGCUCGUuucuugcgcauuaucGCCc -3'
miRNA:   3'- -GAUUUGUGCGCGcaaaGCGGGCG---------------CGG- -5'
22953 3' -54.1 NC_005137.2 + 43814 0.71 0.740136
Target:  5'- --cGGCACGaGCagc-CGCCCGCGCCc -3'
miRNA:   3'- gauUUGUGCgCGcaaaGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 44033 0.72 0.710095
Target:  5'- cCUuuGCGCGCaCgGUUUUGCCUGUGCUa -3'
miRNA:   3'- -GAuuUGUGCGcG-CAAAGCGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.