miRNA display CGI


Results 81 - 100 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 20973 0.75 0.50547
Target:  5'- -----gGCGCGCGUUUUG-CCGCGCUu -3'
miRNA:   3'- gauuugUGCGCGCAAAGCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 32799 0.66 0.939608
Target:  5'- -gGAACACaGCGuCGaauacgUGCCCGUGCg -3'
miRNA:   3'- gaUUUGUG-CGC-GCaaa---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 2173 0.66 0.94427
Target:  5'- -cGAGCGCGCGCuucaucaaGUUUaGUuuGCGCg -3'
miRNA:   3'- gaUUUGUGCGCG--------CAAAgCGggCGCGg -5'
22953 3' -54.1 NC_005137.2 + 44281 0.66 0.954478
Target:  5'- -aGAGCguuGCGCGCuuucugcauggcuaaGUcuucgUCGCCCGCGUUu -3'
miRNA:   3'- gaUUUG---UGCGCG---------------CAa----AGCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 98118 0.66 0.954478
Target:  5'- -cGAACACaGUcCGUuugguaacuuguuuaUUCGgCCGCGCCu -3'
miRNA:   3'- gaUUUGUG-CGcGCA---------------AAGCgGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 28378 0.66 0.954478
Target:  5'- gCUAAACACGUGCucaaCGCUCGUuucuugcgcauuaucGCCc -3'
miRNA:   3'- -GAUUUGUGCGCGcaaaGCGGGCG---------------CGG- -5'
22953 3' -54.1 NC_005137.2 + 101863 0.66 0.952872
Target:  5'- -aAAAUACGCaGCaauuGUUUUGUCUugGCGCCg -3'
miRNA:   3'- gaUUUGUGCG-CG----CAAAGCGGG--CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 42516 0.66 0.952872
Target:  5'- -----aGCGCGCuaaucgcUCGCCCGC-CCg -3'
miRNA:   3'- gauuugUGCGCGcaa----AGCGGGCGcGG- -5'
22953 3' -54.1 NC_005137.2 + 55951 0.68 0.893501
Target:  5'- cCUGAACAcCGCGCGUUg-GCuuGgCGUg -3'
miRNA:   3'- -GAUUUGU-GCGCGCAAagCGggC-GCGg -5'
22953 3' -54.1 NC_005137.2 + 96417 0.68 0.893501
Target:  5'- ---uACcCGCGCGgcgacgCGCCCGcCGCg -3'
miRNA:   3'- gauuUGuGCGCGCaaa---GCGGGC-GCGg -5'
22953 3' -54.1 NC_005137.2 + 110830 0.66 0.94869
Target:  5'- --cGACGCGCaaGagUCGUgCGCGCUg -3'
miRNA:   3'- gauUUGUGCGcgCaaAGCGgGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 13056 0.68 0.879573
Target:  5'- -cGGACACGacacCGCGUUUgCGaaaCGCGCCc -3'
miRNA:   3'- gaUUUGUGC----GCGCAAA-GCgg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 63651 0.68 0.879573
Target:  5'- ----uCGCGCaucGCGUcgCGCCCGCGgUCa -3'
miRNA:   3'- gauuuGUGCG---CGCAaaGCGGGCGC-GG- -5'
22953 3' -54.1 NC_005137.2 + 46680 0.68 0.864739
Target:  5'- -aAAGCACGCGCcaGUaugcUCGCaCGCGCg -3'
miRNA:   3'- gaUUUGUGCGCG--CAa---AGCGgGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 50083 0.68 0.864739
Target:  5'- --uGACGCGCGCcuccaCGgCCGCGCa -3'
miRNA:   3'- gauUUGUGCGCGcaaa-GCgGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 99244 0.69 0.856996
Target:  5'- uUGGGCGCGCGCcccgUUGCCaCGgGCa -3'
miRNA:   3'- gAUUUGUGCGCGcaa-AGCGG-GCgCGg -5'
22953 3' -54.1 NC_005137.2 + 95586 0.69 0.856996
Target:  5'- -----aACGC-CGUUUugcCGCCCGCGCa -3'
miRNA:   3'- gauuugUGCGcGCAAA---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 64707 0.68 0.886653
Target:  5'- -------aGCGCGUgaCGUCgGCGCCg -3'
miRNA:   3'- gauuugugCGCGCAaaGCGGgCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 47561 0.66 0.94869
Target:  5'- --uGGCugGCGCGUacUUGCCaGUGCa -3'
miRNA:   3'- gauUUGugCGCGCAa-AGCGGgCGCGg -5'
22953 3' -54.1 NC_005137.2 + 31241 0.66 0.94427
Target:  5'- uUGAACAUGgcCGCG--UCGUgCGCGCUc -3'
miRNA:   3'- gAUUUGUGC--GCGCaaAGCGgGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.