miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 3' -54.1 NC_005137.2 + 7345 0.66 0.939608
Target:  5'- --cGGCACGCGCcggUUCGaaaUGCGCUg -3'
miRNA:   3'- gauUUGUGCGCGca-AAGCgg-GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 30014 0.66 0.939608
Target:  5'- uUAAGCGCG-GCGUUgagaaGCgCGCGaCCc -3'
miRNA:   3'- gAUUUGUGCgCGCAAag---CGgGCGC-GG- -5'
22953 3' -54.1 NC_005137.2 + 35152 0.66 0.939608
Target:  5'- --cGGCAUGCagGCcg-UUGCCCGuCGCCa -3'
miRNA:   3'- gauUUGUGCG--CGcaaAGCGGGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 112864 0.66 0.939608
Target:  5'- aCUAu-CAUGgGCGUggacgacgUGCCCGCGUUu -3'
miRNA:   3'- -GAUuuGUGCgCGCAaa------GCGGGCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 32799 0.66 0.939608
Target:  5'- -gGAACACaGCGuCGaauacgUGCCCGUGCg -3'
miRNA:   3'- gaUUUGUG-CGC-GCaaa---GCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 124395 0.66 0.939608
Target:  5'- gCUGcGCGCGCGuCGUUUCaGCgCGCaGUUg -3'
miRNA:   3'- -GAUuUGUGCGC-GCAAAG-CGgGCG-CGG- -5'
22953 3' -54.1 NC_005137.2 + 7176 0.66 0.936693
Target:  5'- ----uCGCGCGCGUUgcagCGCauuucgaaccggcgCGUGCCg -3'
miRNA:   3'- gauuuGUGCGCGCAAa---GCGg-------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 122417 0.66 0.934701
Target:  5'- gCUGuuAAgACGCGgGUUUUGCUgcagCGCGCg -3'
miRNA:   3'- -GAU--UUgUGCGCgCAAAGCGG----GCGCGg -5'
22953 3' -54.1 NC_005137.2 + 71977 0.66 0.934701
Target:  5'- aCUGAcguACAUGCGCGUagCGCaCgGCGaCa -3'
miRNA:   3'- -GAUU---UGUGCGCGCAaaGCG-GgCGCgG- -5'
22953 3' -54.1 NC_005137.2 + 49285 0.66 0.934701
Target:  5'- -----gGCGCuuuGCGUUUCGaCCCGCacGCUa -3'
miRNA:   3'- gauuugUGCG---CGCAAAGC-GGGCG--CGG- -5'
22953 3' -54.1 NC_005137.2 + 108131 0.67 0.92955
Target:  5'- ---uGCGCGCGCGUcaaCGCgaccgaUCGCGCa -3'
miRNA:   3'- gauuUGUGCGCGCAaa-GCG------GGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 72508 0.67 0.92955
Target:  5'- aCUAGcguGCACGCggaGCGgcgcaGCUCGCGCa -3'
miRNA:   3'- -GAUU---UGUGCG---CGCaaag-CGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 106278 0.67 0.92955
Target:  5'- -cAGGCACGCGa----UGCCCcacgGCGCCa -3'
miRNA:   3'- gaUUUGUGCGCgcaaaGCGGG----CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 19522 0.67 0.929021
Target:  5'- -gAAACgGCGCcaggcaaacgaagGCGUUcugUGCCCGcCGCCa -3'
miRNA:   3'- gaUUUG-UGCG-------------CGCAAa--GCGGGC-GCGG- -5'
22953 3' -54.1 NC_005137.2 + 78404 0.67 0.924153
Target:  5'- aUAGACACGgGCaaucgGUUUUGCUaucaugCGCGUCa -3'
miRNA:   3'- gAUUUGUGCgCG-----CAAAGCGG------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 93691 0.67 0.924153
Target:  5'- uUGGACACGaCGCaGUUUUcgGCCgacgcgugcauuUGCGCCg -3'
miRNA:   3'- gAUUUGUGC-GCG-CAAAG--CGG------------GCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 32042 0.67 0.924153
Target:  5'- -----gGCGUGCGggUCGUCUGUGUa -3'
miRNA:   3'- gauuugUGCGCGCaaAGCGGGCGCGg -5'
22953 3' -54.1 NC_005137.2 + 35284 0.67 0.922485
Target:  5'- -cAAugGCGCGUGUcaaaccuucgguguUgaccgCGUuuGCGCCa -3'
miRNA:   3'- gaUUugUGCGCGCA--------------Aa----GCGggCGCGG- -5'
22953 3' -54.1 NC_005137.2 + 46825 0.67 0.920796
Target:  5'- ---uACugGCGCGUgcuUUCgauuaaagcggcgcuGCCCuuaGCGCCg -3'
miRNA:   3'- gauuUGugCGCGCA---AAG---------------CGGG---CGCGG- -5'
22953 3' -54.1 NC_005137.2 + 1425 0.67 0.918509
Target:  5'- uUAAACACGCGC-UUUUGCauuuUGUGCa -3'
miRNA:   3'- gAUUUGUGCGCGcAAAGCGg---GCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.