miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22953 5' -52.5 NC_005137.2 + 63936 0.66 0.972107
Target:  5'- cGGGCGCgCGACcuucgcacGGUUCUAcggGCACAc -3'
miRNA:   3'- aCCCGUG-GUUGc-------CCAAGGUua-UGUGU- -5'
22953 5' -52.5 NC_005137.2 + 96568 0.66 0.972107
Target:  5'- cGGGCgcgucGCCGcGCGGGUagCGGUcgGCGCGg -3'
miRNA:   3'- aCCCG-----UGGU-UGCCCAagGUUA--UGUGU- -5'
22953 5' -52.5 NC_005137.2 + 112668 0.66 0.969108
Target:  5'- cGGGaaaCAGCGGG-UCCGGgucgggACGCAc -3'
miRNA:   3'- aCCCgugGUUGCCCaAGGUUa-----UGUGU- -5'
22953 5' -52.5 NC_005137.2 + 100114 0.66 0.969108
Target:  5'- uUGaGCACCaAGCgGGGUUUCGAagcgGCACAg -3'
miRNA:   3'- -ACcCGUGG-UUG-CCCAAGGUUa---UGUGU- -5'
22953 5' -52.5 NC_005137.2 + 62826 0.66 0.969108
Target:  5'- cGGuacaCACCGACGGGaUCauuauaaaGGUGCACAu -3'
miRNA:   3'- aCCc---GUGGUUGCCCaAGg-------UUAUGUGU- -5'
22953 5' -52.5 NC_005137.2 + 41746 0.66 0.967202
Target:  5'- -cGGCACCAauuucaccgaggcacACGGGUUCa---ACGCGa -3'
miRNA:   3'- acCCGUGGU---------------UGCCCAAGguuaUGUGU- -5'
22953 5' -52.5 NC_005137.2 + 70166 0.66 0.965886
Target:  5'- gUGGGauuGCCGGCGGGU---GAUACAUu -3'
miRNA:   3'- -ACCCg--UGGUUGCCCAaggUUAUGUGu -5'
22953 5' -52.5 NC_005137.2 + 97988 0.66 0.959128
Target:  5'- cGGGCGCgCGGCguGGGUgcgcccgccaaguggCCAgcGUGCACGu -3'
miRNA:   3'- aCCCGUG-GUUG--CCCAa--------------GGU--UAUGUGU- -5'
22953 5' -52.5 NC_005137.2 + 24135 0.66 0.958748
Target:  5'- aUGGcCGCCAACGGGUUUUAcuauuugagGCGCu -3'
miRNA:   3'- -ACCcGUGGUUGCCCAAGGUua-------UGUGu -5'
22953 5' -52.5 NC_005137.2 + 39212 0.66 0.958367
Target:  5'- cGGGCGCCAuuugccGCuGGUggccaaauacguuUCCAGUAcCGCGu -3'
miRNA:   3'- aCCCGUGGU------UGcCCA-------------AGGUUAU-GUGU- -5'
22953 5' -52.5 NC_005137.2 + 74133 0.67 0.950647
Target:  5'- -cGGCACgGcACGGGUUgCAuuuaaaauuGUGCACAa -3'
miRNA:   3'- acCCGUGgU-UGCCCAAgGU---------UAUGUGU- -5'
22953 5' -52.5 NC_005137.2 + 95894 0.67 0.946224
Target:  5'- uUGGaucCACCGagcACGGG-UCCAcgACGCAa -3'
miRNA:   3'- -ACCc--GUGGU---UGCCCaAGGUuaUGUGU- -5'
22953 5' -52.5 NC_005137.2 + 43782 0.67 0.940582
Target:  5'- aGcGCGCCAGCGGGUUugCCGAcuuucagcgacgGCACGa -3'
miRNA:   3'- aCcCGUGGUUGCCCAA--GGUUa-----------UGUGU- -5'
22953 5' -52.5 NC_005137.2 + 67379 0.68 0.899614
Target:  5'- aUGGGCACCAuguugauugcaucgGCGGGUUgCAGa----- -3'
miRNA:   3'- -ACCCGUGGU--------------UGCCCAAgGUUaugugu -5'
22953 5' -52.5 NC_005137.2 + 33483 0.69 0.894878
Target:  5'- gGGGUuCCAAUGcGGUUCCA--ACAUg -3'
miRNA:   3'- aCCCGuGGUUGC-CCAAGGUuaUGUGu -5'
22953 5' -52.5 NC_005137.2 + 102884 0.7 0.832544
Target:  5'- aUGGGCugUGACGGGggUuuGcUGCACAc -3'
miRNA:   3'- -ACCCGugGUUGCCCa-AggUuAUGUGU- -5'
22953 5' -52.5 NC_005137.2 + 98034 0.7 0.823786
Target:  5'- cGGGCGCUgcgAGCGGG-UCCAGcaGCGCc -3'
miRNA:   3'- aCCCGUGG---UUGCCCaAGGUUa-UGUGu -5'
22953 5' -52.5 NC_005137.2 + 46045 0.72 0.767601
Target:  5'- -cGGCGCCAACGaGGUUaugccgCCGcUGCACAg -3'
miRNA:   3'- acCCGUGGUUGC-CCAA------GGUuAUGUGU- -5'
22953 5' -52.5 NC_005137.2 + 118351 0.73 0.696287
Target:  5'- cUGGcCACCAugGGGUUU--GUGCACAa -3'
miRNA:   3'- -ACCcGUGGUugCCCAAGguUAUGUGU- -5'
22953 5' -52.5 NC_005137.2 + 48470 0.74 0.654028
Target:  5'- -cGGCACCGugACGGGUaUCgAAUACACu -3'
miRNA:   3'- acCCGUGGU--UGCCCA-AGgUUAUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.