miRNA: 3'- gcCACGCGCgGUCGCggCAa---ACGGcu -5'
miRNA: 3'- -GCCACGCGCG-G--UCGCGG-CAaaCGGCU- -5'
miRNA: 3'- gccaCGCGCGGUCGCggCAAACGGCU- -5'
miRNA: 3'- -GCCACGCGCGG------UCGCGGCA-AACGGcu -5'
miRNA: 3'- -GCCACGCGCGGUCGCGGCAAACGGCU- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22955 | 3' | -60.6 | NC_005137.2 | + | 33775 | 0.71 | 0.389463 |
|
Target: 5'- -uGUGCGCGgCGGCGuuGUgcugUGCCa- -3' miRNA: 3'- gcCACGCGCgGUCGCggCAa---ACGGcu -5' |
|||||||
| 22955 | 3' | -60.6 | NC_005137.2 | + | 110722 | 0.72 | 0.327549 |
|
Target: 5'- aCGGUGUGCGCgCagAGCGCUuGUgcGCCGGg -3' miRNA: 3'- -GCCACGCGCG-G--UCGCGG-CAaaCGGCU- -5' |
|||||||
| 22955 | 3' | -60.6 | NC_005137.2 | + | 43782 | 0.76 | 0.205609 |
|
Target: 5'- ---aGCGCGCCAGCGg-GUUUGCCGAc -3' miRNA: 3'- gccaCGCGCGGUCGCggCAAACGGCU- -5' |
|||||||
| 22955 | 3' | -60.6 | NC_005137.2 | + | 35707 | 0.76 | 0.181988 |
|
Target: 5'- gCGGUGCGUGUCuugacaAGCGCCGUgUUGCCc- -3' miRNA: 3'- -GCCACGCGCGG------UCGCGGCA-AACGGcu -5' |
|||||||
| 22955 | 3' | -60.6 | NC_005137.2 | + | 93470 | 1.09 | 0.000939 |
|
Target: 5'- aCGGUGCGCGCCAGCGCCGUUUGCCGAa -3' miRNA: 3'- -GCCACGCGCGGUCGCGGCAAACGGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home