miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22955 5' -54 NC_005137.2 + 5233 0.67 0.902538
Target:  5'- aGUCGacgcGCCGucucaaugucGCGGCGCAc--GCACg -3'
miRNA:   3'- aCAGCau--CGGC----------UGCCGCGUuuaCGUG- -5'
22955 5' -54 NC_005137.2 + 31581 0.67 0.902538
Target:  5'- --aCGUGGCCGACaucGCGaCAauGAUGCAa -3'
miRNA:   3'- acaGCAUCGGCUGc--CGC-GU--UUACGUg -5'
22955 5' -54 NC_005137.2 + 63902 0.67 0.901887
Target:  5'- cGUUGUauuugcgaugcuuGGCgGACGGUucGCAcgcGGUGCGCg -3'
miRNA:   3'- aCAGCA-------------UCGgCUGCCG--CGU---UUACGUG- -5'
22955 5' -54 NC_005137.2 + 117039 0.67 0.895909
Target:  5'- cGUUGUcaAGUCG-CGGgGCAGcgcacAUGCGCa -3'
miRNA:   3'- aCAGCA--UCGGCuGCCgCGUU-----UACGUG- -5'
22955 5' -54 NC_005137.2 + 100074 0.67 0.889036
Target:  5'- -uUUGU-GCCG-CGGCGCGcg-GCACg -3'
miRNA:   3'- acAGCAuCGGCuGCCGCGUuuaCGUG- -5'
22955 5' -54 NC_005137.2 + 24837 0.67 0.889036
Target:  5'- aUGUCGUGaccaCGACGGCGguGGcgGCAa -3'
miRNA:   3'- -ACAGCAUcg--GCUGCCGCguUUa-CGUg -5'
22955 5' -54 NC_005137.2 + 63288 0.67 0.884796
Target:  5'- cGUCGaguuuaaucuuucaAGCCGcgacCGGCGCGAA-GCGCa -3'
miRNA:   3'- aCAGCa-------------UCGGCu---GCCGCGUUUaCGUG- -5'
22955 5' -54 NC_005137.2 + 116283 0.68 0.866992
Target:  5'- cGUUGUGGaaGACGGCcaGCAc--GCACg -3'
miRNA:   3'- aCAGCAUCggCUGCCG--CGUuuaCGUG- -5'
22955 5' -54 NC_005137.2 + 55579 0.68 0.866992
Target:  5'- aUGgCGgacGCgGGCGGCGCc-GUGCGCg -3'
miRNA:   3'- -ACaGCau-CGgCUGCCGCGuuUACGUG- -5'
22955 5' -54 NC_005137.2 + 30792 0.68 0.866992
Target:  5'- uUGUCGUcGUCGACGcGCaccaGCAAcacguugggaguGUGCGCg -3'
miRNA:   3'- -ACAGCAuCGGCUGC-CG----CGUU------------UACGUG- -5'
22955 5' -54 NC_005137.2 + 81236 0.68 0.859188
Target:  5'- gUGUCGUGuuUGAC-GUGCAAAUGCAa -3'
miRNA:   3'- -ACAGCAUcgGCUGcCGCGUUUACGUg -5'
22955 5' -54 NC_005137.2 + 108569 0.68 0.859188
Target:  5'- aUGUaCGUGaUCGGCGGCGCGcccGUGUGCu -3'
miRNA:   3'- -ACA-GCAUcGGCUGCCGCGUu--UACGUG- -5'
22955 5' -54 NC_005137.2 + 3343 0.69 0.83535
Target:  5'- cUGUCG-GGCCGcGCGGUGCAAuacccggaagacgaGCGCa -3'
miRNA:   3'- -ACAGCaUCGGC-UGCCGCGUUua------------CGUG- -5'
22955 5' -54 NC_005137.2 + 45676 0.69 0.817047
Target:  5'- --aCGUGGgCGGCGGCGCcaacgcGGAUGCu- -3'
miRNA:   3'- acaGCAUCgGCUGCCGCG------UUUACGug -5'
22955 5' -54 NC_005137.2 + 93669 0.69 0.817047
Target:  5'- ------cGCCGGCcGCGUAGAUGCGCa -3'
miRNA:   3'- acagcauCGGCUGcCGCGUUUACGUG- -5'
22955 5' -54 NC_005137.2 + 110785 0.7 0.789557
Target:  5'- ------cGCCGuCGGCGCGuuuGUGCACg -3'
miRNA:   3'- acagcauCGGCuGCCGCGUu--UACGUG- -5'
22955 5' -54 NC_005137.2 + 31044 0.7 0.766577
Target:  5'- uUGUCuugaaGUGGCUG-CGGCGCAuuggcguucggucGUGCACg -3'
miRNA:   3'- -ACAG-----CAUCGGCuGCCGCGUu------------UACGUG- -5'
22955 5' -54 NC_005137.2 + 93678 0.71 0.73078
Target:  5'- aGUUuucGGCCGACGcGUGCAuuUGCGCc -3'
miRNA:   3'- aCAGca-UCGGCUGC-CGCGUuuACGUG- -5'
22955 5' -54 NC_005137.2 + 95513 0.71 0.720608
Target:  5'- cUGaCGUGGCCGGUGGCGacu-UGCGCu -3'
miRNA:   3'- -ACaGCAUCGGCUGCCGCguuuACGUG- -5'
22955 5' -54 NC_005137.2 + 32898 0.71 0.707265
Target:  5'- ---gGUAGCCGGCGGCGguGAcaaaacucgcaacaUGCAg -3'
miRNA:   3'- acagCAUCGGCUGCCGCguUU--------------ACGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.