Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22956 | 3' | -51.2 | NC_005137.2 | + | 93633 | 1.1 | 0.006191 |
Target: 5'- aCGUGCUCACGCAUGUUUGUGCGACGAc -3' miRNA: 3'- -GCACGAGUGCGUACAAACACGCUGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 55875 | 0.7 | 0.912298 |
Target: 5'- uGUGCUCACGUuUGUggccauuaUGUGgGACa- -3' miRNA: 3'- gCACGAGUGCGuACAa-------ACACgCUGcu -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 95524 | 0.69 | 0.924155 |
Target: 5'- gGUGgcgaCUUGCGC-UGcgUGUGCGACGAa -3' miRNA: 3'- gCAC----GAGUGCGuACaaACACGCUGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 6920 | 0.68 | 0.957151 |
Target: 5'- aCGUGUUCACGCAUucaacgcGgaaccUGUGCGaaGCGGu -3' miRNA: 3'- -GCACGAGUGCGUA-------Caa---ACACGC--UGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 98362 | 0.66 | 0.987036 |
Target: 5'- --cGCUUguGCGCcgGUUUGgcgccgucGCGACGGg -3' miRNA: 3'- gcaCGAG--UGCGuaCAAACa-------CGCUGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 116093 | 0.66 | 0.988591 |
Target: 5'- -cUGCUCuCGCAuUGUUuggUGUGCG-CGGa -3' miRNA: 3'- gcACGAGuGCGU-ACAA---ACACGCuGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 7169 | 0.66 | 0.988591 |
Target: 5'- cCGUGa-CGCGCGUGcgccacgUUGUGCccGGCGAc -3' miRNA: 3'- -GCACgaGUGCGUACa------AACACG--CUGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 75123 | 0.67 | 0.968134 |
Target: 5'- uGUGCgaaAUGC-UGUUUG-GUGACGAc -3' miRNA: 3'- gCACGag-UGCGuACAAACaCGCUGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 13981 | 0.69 | 0.939998 |
Target: 5'- aGUGCUCGCGCAcGUucuUUG-GCGAg-- -3' miRNA: 3'- gCACGAGUGCGUaCA---AACaCGCUgcu -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 68143 | 0.69 | 0.924155 |
Target: 5'- -uUGCUCGCGCGUGgccaa-CGACGAc -3' miRNA: 3'- gcACGAGUGCGUACaaacacGCUGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 49980 | 0.7 | 0.892592 |
Target: 5'- -aUGCUCAUGUAUuuugacgcGUUUG-GCGGCGAc -3' miRNA: 3'- gcACGAGUGCGUA--------CAAACaCGCUGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 100171 | 0.71 | 0.885522 |
Target: 5'- gCGUGCUUGCGCAccgcUGgagUUG-GUGGCGGu -3' miRNA: 3'- -GCACGAGUGCGU----ACa--AACaCGCUGCU- -5' |
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22956 | 3' | -51.2 | NC_005137.2 | + | 61350 | 0.73 | 0.773933 |
Target: 5'- aGUGUgg-UGCGUGUacaUUGUGCGGCGAg -3' miRNA: 3'- gCACGaguGCGUACA---AACACGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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