Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22956 | 5' | -57.7 | NC_005137.2 | + | 97989 | 0.66 | 0.819827 |
|
Target: 5'- gGgCGcGCgGCGUGGGUGCGCccgccAAguGGc -3' miRNA: 3'- gCgGC-CGgCGCAUCUACGCG-----UUguCC- -5' |
|||||||
| 22956 | 5' | -57.7 | NC_005137.2 | + | 130116 | 0.66 | 0.828262 |
|
Target: 5'- aGUCGGaaacgcaCGCGUGGGUuGCGgCGauucuGCAGGa -3' miRNA: 3'- gCGGCCg------GCGCAUCUA-CGC-GU-----UGUCC- -5' |
|||||||
| 22956 | 5' | -57.7 | NC_005137.2 | + | 95596 | 0.66 | 0.828262 |
|
Target: 5'- uGCCGcCCGCGcacuGUGCGCGACGu- -3' miRNA: 3'- gCGGCcGGCGCauc-UACGCGUUGUcc -5' |
|||||||
| 22956 | 5' | -57.7 | NC_005137.2 | + | 57423 | 0.66 | 0.834063 |
|
Target: 5'- gCGCCGGCugcaaagccgucguCGCGUacgaaucgguGGAcgccGCGCAACgAGGc -3' miRNA: 3'- -GCGGCCG--------------GCGCA----------UCUa---CGCGUUG-UCC- -5' |
|||||||
| 22956 | 5' | -57.7 | NC_005137.2 | + | 61516 | 0.66 | 0.836522 |
|
Target: 5'- uCGCCGGCCGCccauuugacGcAGA-GCGCGugcCAGa -3' miRNA: 3'- -GCGGCCGGCG---------CaUCUaCGCGUu--GUCc -5' |
|||||||
| 22956 | 5' | -57.7 | NC_005137.2 | + | 30155 | 0.66 | 0.836522 |
|
Target: 5'- uCGUCGGCCuu----GUGCGCAACAGa -3' miRNA: 3'- -GCGGCCGGcgcaucUACGCGUUGUCc -5' |
|||||||
| 22956 | 5' | -57.7 | NC_005137.2 | + | 59957 | 0.66 | 0.836522 |
|
Target: 5'- aGCUGGCuCGCG-AGAUuuacgcGCGCAACc-- -3' miRNA: 3'- gCGGCCG-GCGCaUCUA------CGCGUUGucc -5' |
|||||||
| 22956 | 5' | -57.7 | NC_005137.2 | + | 123495 | 0.66 | 0.844598 |
|
Target: 5'- uCGUCGGgCGCGguug-GCGCAGCGu- -3' miRNA: 3'- -GCGGCCgGCGCaucuaCGCGUUGUcc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home