Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22956 | 5' | -57.7 | NC_005137.2 | + | 3623 | 0.67 | 0.793548 |
Target: 5'- uGUCGGCCGCGcugAGGUuGCGUuuCAa- -3' miRNA: 3'- gCGGCCGGCGCa--UCUA-CGCGuuGUcc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 4600 | 0.7 | 0.576747 |
Target: 5'- aCGaCGG-CGCGaAGGUGCGCGACGcGGg -3' miRNA: 3'- -GCgGCCgGCGCaUCUACGCGUUGU-CC- -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 10880 | 0.69 | 0.677928 |
Target: 5'- uGCUGGCCgacGCGUGcgcGAUGCGguGCAc- -3' miRNA: 3'- gCGGCCGG---CGCAU---CUACGCguUGUcc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 26517 | 0.67 | 0.76598 |
Target: 5'- gCGCUGGCUGCGUuu-UGCGUGcCGGu -3' miRNA: 3'- -GCGGCCGGCGCAucuACGCGUuGUCc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 27880 | 0.74 | 0.398897 |
Target: 5'- gGuuGGCgauCGCGUGGcgGCGCcACGGGu -3' miRNA: 3'- gCggCCG---GCGCAUCuaCGCGuUGUCC- -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 30155 | 0.66 | 0.836522 |
Target: 5'- uCGUCGGCCuu----GUGCGCAACAGa -3' miRNA: 3'- -GCGGCCGGcgcaucUACGCGUUGUCc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 35672 | 0.7 | 0.576747 |
Target: 5'- gGCCGGCCggaacgauuGCGUAGAcgugGUGguGCuGGg -3' miRNA: 3'- gCGGCCGG---------CGCAUCUa---CGCguUGuCC- -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 50089 | 0.68 | 0.717813 |
Target: 5'- gCGCCuccacGGCCGCGcaaAUGCGCGugAGc -3' miRNA: 3'- -GCGG-----CCGGCGCaucUACGCGUugUCc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 57423 | 0.66 | 0.834063 |
Target: 5'- gCGCCGGCugcaaagccgucguCGCGUacgaaucgguGGAcgccGCGCAACgAGGc -3' miRNA: 3'- -GCGGCCG--------------GCGCA----------UCUa---CGCGUUG-UCC- -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 59564 | 0.67 | 0.775298 |
Target: 5'- gCGCUGGCCGUGUucagccuGGUGUaCGACAa- -3' miRNA: 3'- -GCGGCCGGCGCAu------CUACGcGUUGUcc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 59957 | 0.66 | 0.836522 |
Target: 5'- aGCUGGCuCGCG-AGAUuuacgcGCGCAACc-- -3' miRNA: 3'- gCGGCCG-GCGCaUCUA------CGCGUUGucc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 61516 | 0.66 | 0.836522 |
Target: 5'- uCGCCGGCCGCccauuugacGcAGA-GCGCGugcCAGa -3' miRNA: 3'- -GCGGCCGGCG---------CaUCUaCGCGUu--GUCc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 71362 | 0.71 | 0.527154 |
Target: 5'- uCGUCGGCCGCGUuGAcUGUcgGCGACGcGGc -3' miRNA: 3'- -GCGGCCGGCGCAuCU-ACG--CGUUGU-CC- -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 93668 | 1.1 | 0.001682 |
Target: 5'- cCGCCGGCCGCGUAGAUGCGCAACAGGc -3' miRNA: 3'- -GCGGCCGGCGCAUCUACGCGUUGUCC- -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 95596 | 0.66 | 0.828262 |
Target: 5'- uGCCGcCCGCGcacuGUGCGCGACGu- -3' miRNA: 3'- gCGGCcGGCGCauc-UACGCGUUGUcc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 96432 | 0.68 | 0.707928 |
Target: 5'- gCGCCcGCCGCGU---UGCGUuugcGCGGGu -3' miRNA: 3'- -GCGGcCGGCGCAucuACGCGu---UGUCC- -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 97989 | 0.66 | 0.819827 |
Target: 5'- gGgCGcGCgGCGUGGGUGCGCccgccAAguGGc -3' miRNA: 3'- gCgGC-CGgCGCAUCUACGCG-----UUguCC- -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 98749 | 0.68 | 0.687976 |
Target: 5'- uGCuuaCGGCgcuuUGCG-AGGUGCGCAACAGu -3' miRNA: 3'- gCG---GCCG----GCGCaUCUACGCGUUGUCc -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 100181 | 0.73 | 0.451535 |
Target: 5'- gCGUCGGaCCGCGUGcuUGCGCAccGCuGGa -3' miRNA: 3'- -GCGGCC-GGCGCAUcuACGCGU--UGuCC- -5' |
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22956 | 5' | -57.7 | NC_005137.2 | + | 101156 | 0.73 | 0.451535 |
Target: 5'- uGUaCGGCCGCGguUGGAcagGCGUGGCAGGc -3' miRNA: 3'- gCG-GCCGGCGC--AUCUa--CGCGUUGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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