miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22958 3' -44.9 NC_005137.2 + 34242 0.66 0.999995
Target:  5'- aUCGGUGCacaaacacgaaugGCCGCAAGGcaGAU--ACGAc -3'
miRNA:   3'- -AGCUAUG-------------UGGCGUUCUa-CUAuuUGCU- -5'
22958 3' -44.9 NC_005137.2 + 73163 0.66 0.999987
Target:  5'- --aAUAC-CCGCAAGAauccaUGGUGGugGAc -3'
miRNA:   3'- agcUAUGuGGCGUUCU-----ACUAUUugCU- -5'
22958 3' -44.9 NC_005137.2 + 48907 0.67 0.999943
Target:  5'- aCGAUcGCGCCGCcuuguucggcgacaaGAGcgGcAUGGACGAg -3'
miRNA:   3'- aGCUA-UGUGGCG---------------UUCuaC-UAUUUGCU- -5'
22958 3' -44.9 NC_005137.2 + 52088 0.68 0.999887
Target:  5'- aCGGUACAUCGUAAGuGUGcgGAcaguaaucGCGAa -3'
miRNA:   3'- aGCUAUGUGGCGUUC-UACuaUU--------UGCU- -5'
22958 3' -44.9 NC_005137.2 + 6979 0.68 0.999851
Target:  5'- aCGAUGCugCGCAcacgGAcGAGCGGu -3'
miRNA:   3'- aGCUAUGugGCGUucuaCUaUUUGCU- -5'
22958 3' -44.9 NC_005137.2 + 59057 0.69 0.99975
Target:  5'- gCGA---ACCGCAAGAUuGUGAGCGu -3'
miRNA:   3'- aGCUaugUGGCGUUCUAcUAUUUGCu -5'
22958 3' -44.9 NC_005137.2 + 48412 0.7 0.99901
Target:  5'- gCGAUgACGCCG-AGGAUG-UGGGCGAc -3'
miRNA:   3'- aGCUA-UGUGGCgUUCUACuAUUUGCU- -5'
22958 3' -44.9 NC_005137.2 + 107823 0.7 0.998783
Target:  5'- gUGGU--GCCGCAAGAguUGAUAAACa- -3'
miRNA:   3'- aGCUAugUGGCGUUCU--ACUAUUUGcu -5'
22958 3' -44.9 NC_005137.2 + 79903 0.71 0.998195
Target:  5'- aUCGAUgagGCGCCGCAAG-UGGUcAAUGc -3'
miRNA:   3'- -AGCUA---UGUGGCGUUCuACUAuUUGCu -5'
22958 3' -44.9 NC_005137.2 + 109602 0.71 0.997384
Target:  5'- aCGAaACGCCGCGuuGGGUGAccGAUGGg -3'
miRNA:   3'- aGCUaUGUGGCGU--UCUACUauUUGCU- -5'
22958 3' -44.9 NC_005137.2 + 106496 1.12 0.023793
Target:  5'- gUCGAUACACCGCAAGAUGAUAAACGAu -3'
miRNA:   3'- -AGCUAUGUGGCGUUCUACUAUUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.