miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22958 5' -43.6 NC_005137.2 + 42186 0.66 1
Target:  5'- -gUCGcgUCCGCCga-CAggGACGGCg -3'
miRNA:   3'- caAGCaaAGGUGGaagGUuaUUGUUG- -5'
22958 5' -43.6 NC_005137.2 + 33968 0.67 0.999993
Target:  5'- -gUCGUUgccgCCGCCauuaagcUCCGAguuGCAACg -3'
miRNA:   3'- caAGCAAa---GGUGGa------AGGUUau-UGUUG- -5'
22958 5' -43.6 NC_005137.2 + 77295 0.68 0.999971
Target:  5'- -aUCGUUgacgCUgguugacgACCUUCCAGcAACAACu -3'
miRNA:   3'- caAGCAAa---GG--------UGGAAGGUUaUUGUUG- -5'
22958 5' -43.6 NC_005137.2 + 12357 0.74 0.991914
Target:  5'- --gCGUcgUCCACCUUCCA-UAGCAc- -3'
miRNA:   3'- caaGCAa-AGGUGGAAGGUuAUUGUug -5'
22958 5' -43.6 NC_005137.2 + 94104 0.76 0.967585
Target:  5'- --aCGUUUCCACgUUUCAGUuuguGCAACa -3'
miRNA:   3'- caaGCAAAGGUGgAAGGUUAu---UGUUG- -5'
22958 5' -43.6 NC_005137.2 + 27293 0.79 0.899189
Target:  5'- cUUCGUUgcUCCACCUgaaCGGUGGCGGCg -3'
miRNA:   3'- cAAGCAA--AGGUGGAag-GUUAUUGUUG- -5'
22958 5' -43.6 NC_005137.2 + 106542 1.13 0.025631
Target:  5'- uGUUCGUUUCCACCUUCCAAUAACAACg -3'
miRNA:   3'- -CAAGCAAAGGUGGAAGGUUAUUGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.