miRNA: 3'- guaCUCGaa---AACGUuGGC---UGUUGCCG- -5'
miRNA: 3'- -GUACuCGaaaa------CGUU--GGCUGUUGC-CG- -5'
miRNA: 3'- -GUACUCG------AAAACGUU-------------GGC-UGU-------UGCCG- -5'
miRNA: 3'- gUACUCGAAaACGU-------------UGGCU-------------GUUGCCG- -5'
Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22959 | 3' | -48.3 | NC_005137.2 | + | 63454 | 0.66 | 0.998529 |
|
Target: 5'- --aGGGCgcgcgUUGUGcCCGcgaGCGACGGCg -3' miRNA: 3'- guaCUCGaa---AACGUuGGC---UGUUGCCG- -5' |
|||||||
| 22959 | 3' | -48.3 | NC_005137.2 | + | 34085 | 0.66 | 0.998692 |
|
Target: 5'- aCGUGcGCgcgaaugccgGCAAacCCGACAACGuGCg -3' miRNA: 3'- -GUACuCGaaaa------CGUU--GGCUGUUGC-CG- -5' |
|||||||
| 22959 | 3' | -48.3 | NC_005137.2 | + | 49841 | 0.66 | 0.998743 |
|
Target: 5'- aCAUGAGCauguugUUUUGCAAacuguuuaaacauCCGuGCAggucuugGCGGCg -3' miRNA: 3'- -GUACUCG------AAAACGUU-------------GGC-UGU-------UGCCG- -5' |
|||||||
| 22959 | 3' | -48.3 | NC_005137.2 | + | 75709 | 0.66 | 0.998972 |
|
Target: 5'- aAUGAGUUUgUGUAcaaacgagacgccGCCGGucaagcuguuuguCAACGGCa -3' miRNA: 3'- gUACUCGAAaACGU-------------UGGCU-------------GUUGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home