miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22959 3' -48.3 NC_005137.2 + 47406 0.68 0.991998
Target:  5'- gGUGAucaguuuGCgUUUGUacGACCG-CAGCGGCg -3'
miRNA:   3'- gUACU-------CGaAAACG--UUGGCuGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 121196 0.68 0.990909
Target:  5'- gAUGGGCUcUUUGCGAUCaacauUAugGGCa -3'
miRNA:   3'- gUACUCGA-AAACGUUGGcu---GUugCCG- -5'
22959 3' -48.3 NC_005137.2 + 48739 0.69 0.986416
Target:  5'- cCAUGccGCUcUUGUcGCCGAacaaGGCGGCg -3'
miRNA:   3'- -GUACu-CGAaAACGuUGGCUg---UUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 3582 0.69 0.986416
Target:  5'- aCGUaAGcCUUUUGC--CCGGCGAUGGCc -3'
miRNA:   3'- -GUAcUC-GAAAACGuuGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 35617 0.69 0.986416
Target:  5'- -uUGAGCgaUUGUAAaauaacgcCCGACucaAACGGCa -3'
miRNA:   3'- guACUCGaaAACGUU--------GGCUG---UUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 61348 0.69 0.984204
Target:  5'- uGUGGuGCguguacauugUGCGGCgaGACGACGGCa -3'
miRNA:   3'- gUACU-CGaaa-------ACGUUGg-CUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 81426 0.69 0.982584
Target:  5'- --cGAGCUUUgaUGCGcagcccagcACUGAUAACGuGCa -3'
miRNA:   3'- guaCUCGAAA--ACGU---------UGGCUGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 71510 0.7 0.97799
Target:  5'- ---cAGUcaacGCGGCCGACGACGGUa -3'
miRNA:   3'- guacUCGaaaaCGUUGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 34989 0.7 0.975383
Target:  5'- ----cGUUUgugGCGACgGGCAACGGCc -3'
miRNA:   3'- guacuCGAAaa-CGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 74265 0.71 0.962689
Target:  5'- ----cGCgugUUUGCAACUGACAA-GGCg -3'
miRNA:   3'- guacuCGa--AAACGUUGGCUGUUgCCG- -5'
22959 3' -48.3 NC_005137.2 + 116882 0.71 0.950586
Target:  5'- uGUGcGCUgccccGCGACuUGACAACGGCc -3'
miRNA:   3'- gUACuCGAaaa--CGUUG-GCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 122539 0.72 0.946029
Target:  5'- --aGGGCgcuaagGCGGCgGGCGugGGCg -3'
miRNA:   3'- guaCUCGaaaa--CGUUGgCUGUugCCG- -5'
22959 3' -48.3 NC_005137.2 + 79876 0.72 0.930741
Target:  5'- ----cGCaaUUUGCGGCgGGCAGCGGCa -3'
miRNA:   3'- guacuCGa-AAACGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 32892 0.72 0.925099
Target:  5'- --cGAcGCg---GUAGCCGGCGGCGGUg -3'
miRNA:   3'- guaCU-CGaaaaCGUUGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 110441 0.73 0.919184
Target:  5'- gGUGAGCg--UGCAcACCG-CGGcCGGCg -3'
miRNA:   3'- gUACUCGaaaACGU-UGGCuGUU-GCCG- -5'
22959 3' -48.3 NC_005137.2 + 59043 0.73 0.912995
Target:  5'- uGUGAGCguugUGCAAacguUUGugGACGGCu -3'
miRNA:   3'- gUACUCGaaa-ACGUU----GGCugUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 74115 0.73 0.912995
Target:  5'- aCGUGuuGGCUUUcGC-GCCGGC-ACGGCa -3'
miRNA:   3'- -GUAC--UCGAAAaCGuUGGCUGuUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 130536 0.73 0.899807
Target:  5'- ----cGCUgg-GCAGCCGccGCGGCGGCa -3'
miRNA:   3'- guacuCGAaaaCGUUGGC--UGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 110407 0.75 0.845551
Target:  5'- aCGUGGuGUUUccGCAGCUGGCAACGGg -3'
miRNA:   3'- -GUACU-CGAAaaCGUUGGCUGUUGCCg -5'
22959 3' -48.3 NC_005137.2 + 60652 0.75 0.834202
Target:  5'- -uUGAGCacgUGUuugauuuggccaccGACCGACAGCGGUg -3'
miRNA:   3'- guACUCGaaaACG--------------UUGGCUGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.