Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22960 | 3' | -52.7 | NC_005137.2 | + | 107928 | 1.11 | 0.004033 |
Target: 5'- cGGAACAACGCGCCGUGUACGCCAAGUa -3' miRNA: 3'- -CCUUGUUGCGCGGCACAUGCGGUUCA- -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 12691 | 0.74 | 0.644967 |
Target: 5'- uGAGCAGCGCGUCGgaacgGcGCGCCAacAGUu -3' miRNA: 3'- cCUUGUUGCGCGGCa----CaUGCGGU--UCA- -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 88502 | 0.7 | 0.830949 |
Target: 5'- cGGAaugucgccgcGCAGCaaGCGCCGUGUGCGUUcccaauuGAGUu -3' miRNA: 3'- -CCU----------UGUUG--CGCGGCACAUGCGG-------UUCA- -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 70995 | 0.7 | 0.831807 |
Target: 5'- --uGCAAUGCGCCGUGUgccGCGaCCAc-- -3' miRNA: 3'- ccuUGUUGCGCGGCACA---UGC-GGUuca -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 79864 | 0.7 | 0.872107 |
Target: 5'- cGGGCAGCG-GCauaaCGaGUGCGCCAAGUa -3' miRNA: 3'- cCUUGUUGCgCG----GCaCAUGCGGUUCA- -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 39447 | 0.69 | 0.886684 |
Target: 5'- -cGACGcacuuuuuGCGCGCgaCGUGUACGCCAGc- -3' miRNA: 3'- ccUUGU--------UGCGCG--GCACAUGCGGUUca -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 56100 | 0.69 | 0.886684 |
Target: 5'- ---cCAACGCGCgGUGUucagGCGCCAc-- -3' miRNA: 3'- ccuuGUUGCGCGgCACA----UGCGGUuca -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 1662 | 0.69 | 0.893619 |
Target: 5'- uGAACAACGCGUCG---GCGCCGc-- -3' miRNA: 3'- cCUUGUUGCGCGGCacaUGCGGUuca -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 34637 | 0.69 | 0.893619 |
Target: 5'- cGGuuu-GCGCGCCGUGUGCGagCGAu- -3' miRNA: 3'- -CCuuguUGCGCGGCACAUGCg-GUUca -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 27435 | 0.69 | 0.900312 |
Target: 5'- uGGAGCAACGaagacaCUGaacuggaauUGUACGCCAAGg -3' miRNA: 3'- -CCUUGUUGCgc----GGC---------ACAUGCGGUUCa -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 28961 | 0.68 | 0.912959 |
Target: 5'- uGGAgGACGUuucGauagaCGUGUGCGCCGAGg -3' miRNA: 3'- cCUUgUUGCG---Cg----GCACAUGCGGUUCa -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 97988 | 0.68 | 0.918909 |
Target: 5'- cGGGC-GCGCGgCGUGggugcgccCGCCAAGUg -3' miRNA: 3'- cCUUGuUGCGCgGCACau------GCGGUUCA- -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 110548 | 0.68 | 0.924606 |
Target: 5'- uGGAGguGCcCGCCGaUGUGCGCCc--- -3' miRNA: 3'- -CCUUguUGcGCGGC-ACAUGCGGuuca -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 93569 | 0.68 | 0.930052 |
Target: 5'- --cGCAACGCGCCGUcGU-CGCaAAGa -3' miRNA: 3'- ccuUGUUGCGCGGCA-CAuGCGgUUCa -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 65645 | 0.68 | 0.930052 |
Target: 5'- aGAGuCAACGCccucacaCGUGUACGCCAAc- -3' miRNA: 3'- cCUU-GUUGCGcg-----GCACAUGCGGUUca -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 112470 | 0.68 | 0.935245 |
Target: 5'- uGGGCGACgGCGCCGUGUaaucaaaaucGCGCaacucGGUa -3' miRNA: 3'- cCUUGUUG-CGCGGCACA----------UGCGgu---UCA- -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 7141 | 0.68 | 0.935245 |
Target: 5'- cGGcGACcGCuCGuCCGUGUGCGCCAGc- -3' miRNA: 3'- -CC-UUGuUGcGC-GGCACAUGCGGUUca -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 110729 | 0.67 | 0.944878 |
Target: 5'- aGGAugGGCGCGCCaag-ACG-CAGGUg -3' miRNA: 3'- -CCUugUUGCGCGGcacaUGCgGUUCA- -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 14593 | 0.67 | 0.944878 |
Target: 5'- aGAGuCGGCGUuaaaGUCGguaggugGUGCGCCAAGUa -3' miRNA: 3'- cCUU-GUUGCG----CGGCa------CAUGCGGUUCA- -5' |
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22960 | 3' | -52.7 | NC_005137.2 | + | 115307 | 0.67 | 0.949321 |
Target: 5'- cGGGCGAuUGCGCCGcgGUugaACGCUGAGg -3' miRNA: 3'- cCUUGUU-GCGCGGCa-CA---UGCGGUUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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