miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22960 5' -52.9 NC_005137.2 + 108269 0.66 0.971225
Target:  5'- -uGCG-GUGCuGCGAUCGG-CGCGc-- -3'
miRNA:   3'- agUGCaUACG-CGCUAGCCaGCGCaac -5'
22960 5' -52.9 NC_005137.2 + 42992 0.66 0.971225
Target:  5'- gUCAacu-UGCuugGCGGUCGGUCgGUGUUGa -3'
miRNA:   3'- -AGUgcauACG---CGCUAGCCAG-CGCAAC- -5'
22960 5' -52.9 NC_005137.2 + 20737 0.66 0.971225
Target:  5'- aCGCGUcgacggucAUGuCGCGAgguccUCGGUaCGCGUg- -3'
miRNA:   3'- aGUGCA--------UAC-GCGCU-----AGCCA-GCGCAac -5'
22960 5' -52.9 NC_005137.2 + 37458 0.66 0.968214
Target:  5'- cCACGUAuuUGCGCucGAUCcGGUCaaaGUUGg -3'
miRNA:   3'- aGUGCAU--ACGCG--CUAG-CCAGcg-CAAC- -5'
22960 5' -52.9 NC_005137.2 + 63793 0.66 0.968214
Target:  5'- aCGCG-AUGCGCGAccgucgccgCGG-CgGCGUUGa -3'
miRNA:   3'- aGUGCaUACGCGCUa--------GCCaG-CGCAAC- -5'
22960 5' -52.9 NC_005137.2 + 12978 0.66 0.968214
Target:  5'- gCACGUggGCGUugucaaAUUGGUCGCGa-- -3'
miRNA:   3'- aGUGCAuaCGCGc-----UAGCCAGCGCaac -5'
22960 5' -52.9 NC_005137.2 + 28944 0.67 0.953942
Target:  5'- -gACGUGUGCGCcGagGG-CGCGUUc -3'
miRNA:   3'- agUGCAUACGCGcUagCCaGCGCAAc -5'
22960 5' -52.9 NC_005137.2 + 109427 0.67 0.953942
Target:  5'- cCGCGgccUAUGCGCGGcccaUCGGUCacccaacgcgGCGUUu -3'
miRNA:   3'- aGUGC---AUACGCGCU----AGCCAG----------CGCAAc -5'
22960 5' -52.9 NC_005137.2 + 91589 0.68 0.913831
Target:  5'- uUCACGUcuggGUGCGCGA-CGccugCGCGUUu -3'
miRNA:   3'- -AGUGCA----UACGCGCUaGCca--GCGCAAc -5'
22960 5' -52.9 NC_005137.2 + 79523 0.69 0.901321
Target:  5'- gUCGCGUAUuuuaaacucGCuaGAgUUGGUCGUGUUGa -3'
miRNA:   3'- -AGUGCAUA---------CGcgCU-AGCCAGCGCAAC- -5'
22960 5' -52.9 NC_005137.2 + 69270 0.69 0.880741
Target:  5'- -gACGgcGUGCGCGGUCGcGgCGCGUUu -3'
miRNA:   3'- agUGCa-UACGCGCUAGC-CaGCGCAAc -5'
22960 5' -52.9 NC_005137.2 + 84566 0.7 0.850098
Target:  5'- aCACGUcgGCGCGuUCGGgCGgGUc- -3'
miRNA:   3'- aGUGCAuaCGCGCuAGCCaGCgCAac -5'
22960 5' -52.9 NC_005137.2 + 125004 0.7 0.832661
Target:  5'- -gGCGggAUGCcgcaccgGCGAUCGGUUGCGgcgUGg -3'
miRNA:   3'- agUGCa-UACG-------CGCUAGCCAGCGCa--AC- -5'
22960 5' -52.9 NC_005137.2 + 107963 1.1 0.00482
Target:  5'- gUCACGUAUGCGCGAUCGGUCGCGUUGa -3'
miRNA:   3'- -AGUGCAUACGCGCUAGCCAGCGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.