miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22962 5' -44.2 NC_005137.2 + 9819 0.66 0.999995
Target:  5'- gCGCuGCAAguugaaauguggucuGAAGACGGUGUugAAGAAUAu -3'
miRNA:   3'- -GCG-CGUU---------------CUUCUGCUACA--UUUUUGUu -5'
22962 5' -44.2 NC_005137.2 + 24063 0.66 0.999997
Target:  5'- aUGCGCugguuGGAGGGCGAUGa-------- -3'
miRNA:   3'- -GCGCGu----UCUUCUGCUACauuuuuguu -5'
22962 5' -44.2 NC_005137.2 + 27782 0.7 0.99923
Target:  5'- gCGUGCAGGcAAGACGuaaccgauuuUGUAAAAAUAu -3'
miRNA:   3'- -GCGCGUUC-UUCUGCu---------ACAUUUUUGUu -5'
22962 5' -44.2 NC_005137.2 + 41162 0.7 0.999386
Target:  5'- gGCGC-AGAcGGCGGUGUGGuAGGCGu -3'
miRNA:   3'- gCGCGuUCUuCUGCUACAUU-UUUGUu -5'
22962 5' -44.2 NC_005137.2 + 46158 0.77 0.941263
Target:  5'- gGCGUAaaAGGAGGCGGUGUugAGAAACGu -3'
miRNA:   3'- gCGCGU--UCUUCUGCUACA--UUUUUGUu -5'
22962 5' -44.2 NC_005137.2 + 58358 0.69 0.999768
Target:  5'- uCGUGCAAGAAGACGcacuUGcAAAAguACAu -3'
miRNA:   3'- -GCGCGUUCUUCUGCu---ACaUUUU--UGUu -5'
22962 5' -44.2 NC_005137.2 + 70228 0.68 0.999943
Target:  5'- gGCGUcgguGAAGGCGucgGUGAAGGCGu -3'
miRNA:   3'- gCGCGuu--CUUCUGCua-CAUUUUUGUu -5'
22962 5' -44.2 NC_005137.2 + 70288 0.68 0.999943
Target:  5'- gGCGUcgguGAAGGCGucgGUGAAGGCGu -3'
miRNA:   3'- gCGCGuu--CUUCUGCua-CAUUUUUGUu -5'
22962 5' -44.2 NC_005137.2 + 108198 1.08 0.037753
Target:  5'- aCGCGCAAGAAGACGAUGUAAAAACAAc -3'
miRNA:   3'- -GCGCGUUCUUCUGCUACAUUUUUGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.