miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22963 5' -58.3 NC_005137.2 + 99336 0.66 0.76874
Target:  5'- cGUGgGCGGCaaCGUUgagGGUCACCgGGCc -3'
miRNA:   3'- aUACgCGCCGg-GUAG---CCAGUGGgUUG- -5'
22963 5' -58.3 NC_005137.2 + 106610 0.66 0.76874
Target:  5'- gAUGCGUaGCCCGUCGuuGUUcUCCGACc -3'
miRNA:   3'- aUACGCGcCGGGUAGC--CAGuGGGUUG- -5'
22963 5' -58.3 NC_005137.2 + 2588 0.66 0.759198
Target:  5'- --gGCGCGGgCaCGUCGGcCACCgCGugACa -3'
miRNA:   3'- auaCGCGCCgG-GUAGCCaGUGG-GU--UG- -5'
22963 5' -58.3 NC_005137.2 + 110678 0.66 0.739782
Target:  5'- cGUGCGCGgaGCCCAUCaaguaucgGGUCAUgCGcGCg -3'
miRNA:   3'- aUACGCGC--CGGGUAG--------CCAGUGgGU-UG- -5'
22963 5' -58.3 NC_005137.2 + 23569 0.66 0.729926
Target:  5'- cGUGCGUguucuucccacGGCUCGUCGGUgCuuuCCCAGu -3'
miRNA:   3'- aUACGCG-----------CCGGGUAGCCA-Gu--GGGUUg -5'
22963 5' -58.3 NC_005137.2 + 3487 0.67 0.709967
Target:  5'- --cGCGCGGCCCGacaGGUCAaUCAc- -3'
miRNA:   3'- auaCGCGCCGGGUag-CCAGUgGGUug -5'
22963 5' -58.3 NC_005137.2 + 46117 0.67 0.699883
Target:  5'- --aGCGUGGaCCA-CGcGUCAcCCCAACa -3'
miRNA:   3'- auaCGCGCCgGGUaGC-CAGU-GGGUUG- -5'
22963 5' -58.3 NC_005137.2 + 65277 0.67 0.689741
Target:  5'- --gGCGaCGGUgaCCAUUGGgUACCCGACc -3'
miRNA:   3'- auaCGC-GCCG--GGUAGCCaGUGGGUUG- -5'
22963 5' -58.3 NC_005137.2 + 18480 0.67 0.678529
Target:  5'- aGUGCGCGGCUgugccgaCGUCaaGUUuaaGCCCAACa -3'
miRNA:   3'- aUACGCGCCGG-------GUAGc-CAG---UGGGUUG- -5'
22963 5' -58.3 NC_005137.2 + 31690 0.68 0.62818
Target:  5'- --cGCGUGGUUgugCGGUCGCaCCGACg -3'
miRNA:   3'- auaCGCGCCGGguaGCCAGUG-GGUUG- -5'
22963 5' -58.3 NC_005137.2 + 125265 0.69 0.597327
Target:  5'- --gGCGCGGCCCGcCGcuugaguuauUCACCCGAa -3'
miRNA:   3'- auaCGCGCCGGGUaGCc---------AGUGGGUUg -5'
22963 5' -58.3 NC_005137.2 + 116881 0.69 0.594252
Target:  5'- aUGUGCGCuGCCCcgCGacuugacaacggccGUCACCCGu- -3'
miRNA:   3'- -AUACGCGcCGGGuaGC--------------CAGUGGGUug -5'
22963 5' -58.3 NC_005137.2 + 21387 0.69 0.587085
Target:  5'- gGUGacaGCGGCCCGcaGcGUCGCCCAc- -3'
miRNA:   3'- aUACg--CGCCGGGUagC-CAGUGGGUug -5'
22963 5' -58.3 NC_005137.2 + 27892 0.7 0.536501
Target:  5'- cGUG-GCGGCgCCA-CGGgucaUCGCCCGGCa -3'
miRNA:   3'- aUACgCGCCG-GGUaGCC----AGUGGGUUG- -5'
22963 5' -58.3 NC_005137.2 + 94365 0.7 0.494254
Target:  5'- --aGCGCGGCCgAggUGGUCAuugacucggugcgcCCCAACc -3'
miRNA:   3'- auaCGCGCCGGgUa-GCCAGU--------------GGGUUG- -5'
22963 5' -58.3 NC_005137.2 + 63659 0.72 0.413935
Target:  5'- --cGCGuCGcGCCCG-CGGUCACCgAACc -3'
miRNA:   3'- auaCGC-GC-CGGGUaGCCAGUGGgUUG- -5'
22963 5' -58.3 NC_005137.2 + 117090 0.77 0.200917
Target:  5'- aGUGCGCGG-CCAUCucuUCACCCAACa -3'
miRNA:   3'- aUACGCGCCgGGUAGcc-AGUGGGUUG- -5'
22963 5' -58.3 NC_005137.2 + 109434 1.08 0.001492
Target:  5'- cUAUGCGCGGCCCAUCGGUCACCCAACg -3'
miRNA:   3'- -AUACGCGCCGGGUAGCCAGUGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.